Implements Partition-Assisted Clustering and Multiple Alignments of Networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set.
| Version: | 1.0.9 |
| Imports: | Rcpp (≥ 0.12.2), igraph, parmigene, infotheo, dplyr, Rtsne, ggplot2, ggrepel |
| LinkingTo: | Rcpp |
| Suggests: | knitr, NMF |
| Published: | 2017-08-16 |
| Author: | Ye Henry Li, Dangna Li |
| Maintainer: | Ye Henry Li <ywli at stanford.edu> |
| License: | GPL-3 |
| URL: | http://biorxiv.org/content/early/2017/03/28/116566 |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| CRAN checks: | PAC results |
| Reference manual: | PAC.pdf |
| Vignettes: |
Using the PAC package |
| Package source: | PAC_1.0.9.tar.gz |
| Windows binaries: | r-devel: PAC_1.0.9.zip, r-release: PAC_1.0.9.zip, r-oldrel: PAC_1.0.9.zip |
| OS X El Capitan binaries: | r-release: PAC_1.0.9.tgz |
| OS X Mavericks binaries: | r-oldrel: PAC_1.0.9.tgz |
| Old sources: | PAC archive |
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