An accurate and easy tool for performing trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.
| Version: | 1.0 |
| Depends: | R (≥ 3.0.0) |
| Imports: | dplyr, fitdistrplus, grDevices, ggplot2 (≥ 2.0), magrittr, MASS, mclust, Rcpp, pbapply, pheatmap, princurve, purrr, ranger, RColorBrewer, reshape2, splines, stats, testthat, tidyr, TSP, utils |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown |
| Published: | 2017-09-15 |
| Author: | Robrecht Cannoodt [aut, cre] |
| Maintainer: | Robrecht Cannoodt <robrecht.cannoodt at gmail.com> |
| BugReports: | https://github.com/rcannood/SCORPIUS/issues |
| License: | GPL-3 |
| URL: | http://github.com/rcannood/SCORPIUS |
| NeedsCompilation: | yes |
| CRAN checks: | SCORPIUS results |
| Reference manual: | SCORPIUS.pdf |
| Vignettes: |
Investigating dendritic cell maturation in dendritic cell progenitors Trajectory inference from simulated data |
| Package source: | SCORPIUS_1.0.tar.gz |
| Windows binaries: | r-devel: SCORPIUS_1.0.zip, r-release: SCORPIUS_1.0.zip, r-oldrel: SCORPIUS_1.0.zip |
| OS X El Capitan binaries: | r-release: SCORPIUS_1.0.tgz |
| OS X Mavericks binaries: | r-oldrel: SCORPIUS_1.0.tgz |
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