Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
| Version: | 1.0.4 |
| Depends: | R (≥ 3.0) |
| Imports: | testthat (≥ 0.7.1), VennDiagram (≥ 1.6.4), data.table (≥ 1.8.11), R.utils (≥ 2.0.2), yaml (≥ 2.1.10), parallel, grid |
| Suggests: | knitr (≥ 1.4), rmarkdown (≥ 0.9.5) |
| Published: | 2017-10-13 |
| Author: | Daryl Waggott [aut], Syed Haider [aut], Emilie Lalonde [ctb], Clement Fung [ctb], Paul C. Boutros [aut, cre, cph] |
| Maintainer: | Paul C. Boutros <Paul.Boutros at oicr.on.ca> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| SystemRequirements: | Preferred genomic operations engine: 'BEDTools', 'BEDOPS' and 'Tabix'. |
| Materials: | NEWS |
| CRAN checks: | bedr results |
| Reference manual: | bedr.pdf |
| Vignettes: |
bedr |
| Package source: | bedr_1.0.4.tar.gz |
| Windows binaries: | r-devel: bedr_1.0.4.zip, r-release: bedr_1.0.4.zip, r-oldrel: bedr_1.0.4.zip |
| OS X El Capitan binaries: | r-release: bedr_1.0.4.tgz |
| OS X Mavericks binaries: | r-oldrel: bedr_1.0.4.tgz |
| Old sources: | bedr archive |
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