A collection of functions to detect gene probes with different means or variances between two groups in (epi)-genomic data analysis, including classical F test and Levene's test for equal variance, likelihood ratio test for equal mean and equal variance, the wrappers for functions in R Bioconductor package 'missMethyl' (Phipson and Oshlack (2014) <doi:10.1186/s13059-014-0465-4>), the implementation of the methods proposed by Ahn and Wang (2013) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621641/>, and the improved Ahn and Wang's methods that we proposed recently (Qiu and Li et al. (2017) <http://oprscience.com/wp-content/uploads/2016/07/new-score-tests-for-equality-of-variances-in-the-application-of-dna-methylation-data-analysis.pdf>).
| Version: | 0.0.6 |
| Depends: | R (≥ 3.4.0), Biobase, missMethyl, stats |
| Imports: | MASS, graphics, lawstat, methylumi, grDevices |
| Published: | 2017-10-05 |
| Author: | Xuan Li [aut, ctb], Weiliang Qiu [aut, cre], Yuejiao Fu [aut, ctb], Xiaogang Wang [aut, ctb] |
| Maintainer: | Weiliang Qiu <stwxq at channing.harvard.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | diffMeanVar results |
| Reference manual: | diffMeanVar.pdf |
| Package source: | diffMeanVar_0.0.6.tar.gz |
| Windows binaries: | r-devel: diffMeanVar_0.0.6.zip, r-release: diffMeanVar_0.0.6.zip, r-oldrel: not available |
| OS X El Capitan binaries: | r-release: not available |
| OS X Mavericks binaries: | r-oldrel: not available |
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