Calculates cryptic scores for genes using the ratio (Cheung et al., 2008), the 3' enrichment method (DeGennaro et al., 2013) and the probabilistic method. It also provide methods to estimates cryptic transcription start sites.
| Version: | 0.99.2 |
| Depends: | R (≥ 3.2.0) |
| Imports: | biomaRt (≥ 2.24.1), data.table (≥ 1.9.6), IRanges (≥ 2.2.9), mclust (≥ 5.1), MESS (≥ 0.3-2), parallel (≥ 3.2.2), Rcpp (≥ 0.12.1), Rsamtools (≥ 1.20.5) |
| LinkingTo: | Rcpp |
| Suggests: | knitr, testthat, rmarkdown |
| Published: | 2016-02-08 |
| Author: | Nicole Uwimana, Benjamin Haibe-Kains, Francois Robert |
| Maintainer: | Nicole Uwimana <nicole.uwimana at gmail.com> |
| BugReports: | https://bitbucket.org/nuwimana/ycrypticrnas/issues |
| License: | GPL-2 |
| URL: | https://bitbucket.org/nuwimana/ycrypticrnas |
| NeedsCompilation: | yes |
| CRAN checks: | yCrypticRNAs results |
| Reference manual: | yCrypticRNAs.pdf |
| Vignettes: |
yCrypticRNAs |
| Package source: | yCrypticRNAs_0.99.2.tar.gz |
| Windows binaries: | r-devel: yCrypticRNAs_0.99.2.zip, r-release: yCrypticRNAs_0.99.2.zip, r-oldrel: yCrypticRNAs_0.99.2.zip |
| OS X El Capitan binaries: | r-release: not available |
| OS X Mavericks binaries: | r-oldrel: yCrypticRNAs_0.99.2.tgz |
| Old sources: | yCrypticRNAs archive |
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