Last updated on 2018-02-25 00:48:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.10.4-3 | 24.14 | 275.22 | 299.36 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.10.4-3 | 18.61 | 187.94 | 206.55 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.10.4-3 | 324.70 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.10.4-3 | 317.13 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.10.4-3 | 108.00 | 467.00 | 575.00 | ERROR | |
| r-patched-linux-x86_64 | 1.10.4-3 | 27.14 | 261.39 | 288.53 | ERROR | |
| r-patched-solaris-x86 | 1.10.4-3 | 432.20 | OK | |||
| r-release-linux-x86_64 | 1.10.4-3 | 28.69 | 261.69 | 290.38 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.10.4-3 | 72.00 | 524.00 | 596.00 | OK | |
| r-release-osx-x86_64 | 1.10.4-3 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.10.4-3 | 70.00 | 405.00 | 475.00 | OK | |
| r-oldrel-osx-x86_64 | 1.10.4-3 | OK |
Version: 1.10.4-3
Check: tests
Result: ERROR
Running ‘autoprint.R’ [0s/1s]
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
Running ‘knitr.R’ [1s/1s]
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [190s/221s]
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
Running /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw
Loading required package: bit64
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:data.table':
setattr
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2012 Jens Oehlschlaegel
creators: integer64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:bit':
still.identical
The following objects are masked from 'package:base':
%in%, :, is.double, match, order, rank
Loading required package: knitr
Loading required package: nanotime
Loading required package: chron
Loading required package: ggplot2
Loading required package: plyr
Loading required package: reshape
Attaching package: 'reshape'
The following objects are masked from 'package:plyr':
rename, round_any
The following object is masked from 'package:data.table':
melt
Loading required package: reshape2
Attaching package: 'reshape2'
The following objects are masked from 'package:reshape':
colsplit, melt, recast
The following objects are masked from 'package:data.table':
dcast, melt
Loading required package: testthat
Loading required package: hexbin
Loading required package: fastmatch
Loading required package: nlme
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:bit64':
match, order, rank
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:reshape':
expand, rename
The following object is masked from 'package:plyr':
rename
The following objects are masked from 'package:data.table':
first, second
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:nlme':
collapse
The following object is masked from 'package:plyr':
desc
The following object is masked from 'package:data.table':
shift
Loading required package: GenomeInfoDb
Loading required package: xts
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Attaching package: 'xts'
The following object is masked from 'package:S4Vectors':
first
The following objects are masked from 'package:data.table':
first, last
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: 'gdata'
The following objects are masked from 'package:xts':
first, last
The following object is masked from 'package:GenomicRanges':
trim
The following object is masked from 'package:IRanges':
trim
The following objects are masked from 'package:S4Vectors':
first, first<-
The following object is masked from 'package:BiocGenerics':
combine
The following object is masked from 'package:stats4':
nobs
The following objects are masked from 'package:data.table':
first, last
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
Loading required package: caret
Loading required package: lattice
Loading required package: curl
Loading required package: plm
Loading required package: Formula
Attaching package: 'plm'
The following object is masked from 'package:data.table':
between
Loading required package: rmarkdown
Attaching package: 'reshape2'
The following objects are masked _by_ 'package:data.table':
dcast, melt
Attaching package: 'reshape'
The following objects are masked _by_ 'package:S4Vectors':
expand, rename
The following objects are masked _by_ 'package:plyr':
rename, round_any
The following object is masked _by_ 'package:data.table':
melt
The following objects are masked _by_ 'package:reshape2':
colsplit, melt, recast
Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 1373 ran without errors but failed check that x equals y:
> x = grepl("NAM\\(1\\)", out)
[1] FALSE
> y = TRUE
[1] TRUE
1 element mismatch
Running test id 1696
Error in eval(exprs[i], envir) :
6 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Fri Feb 23 07:16:11 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1, 1373.
Calls: test.data.table -> sys.source -> eval -> eval
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.10.4-3
Check: tests
Result: ERROR
Running ‘autoprint.R’ [0s/1s]
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
Running ‘knitr.R’ [0s/1s]
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [125s/174s]
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
Running /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/tests/tests.Rraw
Loading required package: bit64
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:data.table':
setattr
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2012 Jens Oehlschlaegel
creators: integer64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:bit':
still.identical
The following objects are masked from 'package:base':
%in%, :, is.double, match, order, rank
Loading required package: knitr
Loading required package: nanotime
Loading required package: chron
Loading required package: ggplot2
Loading required package: plyr
Loading required package: reshape
Attaching package: 'reshape'
The following objects are masked from 'package:plyr':
rename, round_any
The following object is masked from 'package:data.table':
melt
Loading required package: reshape2
Attaching package: 'reshape2'
The following objects are masked from 'package:reshape':
colsplit, melt, recast
The following objects are masked from 'package:data.table':
dcast, melt
Loading required package: testthat
Loading required package: hexbin
Loading required package: fastmatch
Loading required package: nlme
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:bit64':
match, order, rank
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:reshape':
expand, rename
The following object is masked from 'package:plyr':
rename
The following objects are masked from 'package:data.table':
first, second
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:nlme':
collapse
The following object is masked from 'package:plyr':
desc
The following object is masked from 'package:data.table':
shift
Loading required package: GenomeInfoDb
Loading required package: xts
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Attaching package: 'xts'
The following object is masked from 'package:S4Vectors':
first
The following objects are masked from 'package:data.table':
first, last
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: 'gdata'
The following objects are masked from 'package:xts':
first, last
The following object is masked from 'package:GenomicRanges':
trim
The following object is masked from 'package:IRanges':
trim
The following objects are masked from 'package:S4Vectors':
first, first<-
The following object is masked from 'package:BiocGenerics':
combine
The following object is masked from 'package:stats4':
nobs
The following objects are masked from 'package:data.table':
first, last
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
Loading required package: caret
Loading required package: lattice
Loading required package: curl
Loading required package: plm
Loading required package: Formula
Attaching package: 'plm'
The following object is masked from 'package:data.table':
between
Loading required package: rmarkdown
Attaching package: 'reshape2'
The following objects are masked _by_ 'package:data.table':
dcast, melt
Attaching package: 'reshape'
The following objects are masked _by_ 'package:S4Vectors':
expand, rename
The following objects are masked _by_ 'package:plyr':
rename, round_any
The following object is masked _by_ 'package:data.table':
melt
The following objects are masked _by_ 'package:reshape2':
colsplit, melt, recast
Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 1373 ran without errors but failed check that x equals y:
> x = grepl("NAM\\(1\\)", out)
[1] FALSE
> y = TRUE
[1] TRUE
1 element mismatch
Test 1543.3 ran without errors but failed check that x equals y:
> x = ans1
A X total.x A.y total.y
1 e 3 TRUE 9 FALSE
2 f 8 TRUE 2 FALSE
3 g 4 TRUE 1 FALSE
4 h 6 TRUE 8 FALSE
5 i 7 TRUE 5 FALSE
6 j 9 TRUE 3 FALSE
> y = ans2
A X total.x A total.y
1 e 3 TRUE 9 FALSE
2 f 8 TRUE 2 FALSE
3 g 4 TRUE 1 FALSE
4 h 6 TRUE 8 FALSE
5 i 7 TRUE 5 FALSE
6 j 9 TRUE 3 FALSE
Running test id 1696
Error in eval(exprs[i], envir) :
7 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Feb 24 18:08:28 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1, 1373, 1543.3.
Calls: test.data.table -> sys.source -> eval -> eval
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.10.4-3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GenomicRanges’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 1.10.4-3
Check: tests
Result: ERROR
Running ‘autoprint.R’
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
Running ‘knitr.R’
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [194s/223s]
Running ‘testthat.R’
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
Running /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw
Loading required package: bit64
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:data.table':
setattr
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2012 Jens Oehlschlaegel
creators: integer64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:bit':
still.identical
The following objects are masked from 'package:base':
%in%, :, is.double, match, order, rank
Loading required package: knitr
Loading required package: nanotime
Loading required package: chron
Loading required package: ggplot2
Loading required package: plyr
Loading required package: reshape
Attaching package: 'reshape'
The following objects are masked from 'package:plyr':
rename, round_any
The following object is masked from 'package:data.table':
melt
Loading required package: reshape2
Attaching package: 'reshape2'
The following objects are masked from 'package:reshape':
colsplit, melt, recast
The following objects are masked from 'package:data.table':
dcast, melt
Loading required package: testthat
Loading required package: hexbin
Loading required package: fastmatch
Loading required package: nlme
Loading required package: xts
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Attaching package: 'xts'
The following objects are masked from 'package:data.table':
first, last
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: 'gdata'
The following objects are masked from 'package:xts':
first, last
The following objects are masked from 'package:data.table':
first, last
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
Loading required package: caret
Loading required package: lattice
Loading required package: curl
Loading required package: plm
Loading required package: Formula
Attaching package: 'plm'
The following object is masked from 'package:data.table':
between
Loading required package: rmarkdown
Loading required package: parallel
Attaching package: 'reshape2'
The following objects are masked _by_ 'package:data.table':
dcast, melt
Attaching package: 'reshape'
The following objects are masked _by_ 'package:plyr':
rename, round_any
The following object is masked _by_ 'package:data.table':
melt
The following objects are masked _by_ 'package:reshape2':
colsplit, melt, recast
Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
Tests 1372.3+ not run. If required call library(GenomicRanges) first.
Test 1373 ran without errors but failed check that x equals y:
> x = grepl("NAM\\(1\\)", out)
[1] FALSE
> y = TRUE
[1] TRUE
1 element mismatch
Running test id 1696
Error in eval(exprs[i], envir) :
1 error out of 5908 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Fri Feb 23 22:03:59 2018. Search tests.Rraw for test number 1373.
Calls: test.data.table -> sys.source -> eval -> eval
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.10.4-3
Check: tests
Result: ERROR
Running ‘autoprint.R’
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
Running ‘knitr.R’
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [185s/274s]
Running ‘testthat.R’
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
Running /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw
Loading required package: bit64
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:data.table':
setattr
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2012 Jens Oehlschlaegel
creators: integer64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:bit':
still.identical
The following objects are masked from 'package:base':
%in%, :, is.double, match, order, rank
Loading required package: knitr
Loading required package: nanotime
Loading required package: chron
Loading required package: ggplot2
Loading required package: plyr
Loading required package: reshape
Attaching package: 'reshape'
The following objects are masked from 'package:plyr':
rename, round_any
The following object is masked from 'package:data.table':
melt
Loading required package: reshape2
Attaching package: 'reshape2'
The following objects are masked from 'package:reshape':
colsplit, melt, recast
The following objects are masked from 'package:data.table':
dcast, melt
Loading required package: testthat
Loading required package: hexbin
Loading required package: fastmatch
Loading required package: nlme
Loading required package: xts
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Attaching package: 'xts'
The following objects are masked from 'package:data.table':
first, last
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: 'gdata'
The following objects are masked from 'package:xts':
first, last
The following objects are masked from 'package:data.table':
first, last
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
Loading required package: caret
Loading required package: lattice
Loading required package: curl
Loading required package: plm
Loading required package: Formula
Attaching package: 'plm'
The following object is masked from 'package:data.table':
between
Loading required package: rmarkdown
Loading required package: parallel
Attaching package: 'reshape2'
The following objects are masked _by_ 'package:data.table':
dcast, melt
Attaching package: 'reshape'
The following objects are masked _by_ 'package:plyr':
rename, round_any
The following object is masked _by_ 'package:data.table':
melt
The following objects are masked _by_ 'package:reshape2':
colsplit, melt, recast
Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
Tests 1372.3+ not run. If required call library(GenomicRanges) first.
Test 1373 ran without errors but failed check that x equals y:
> x = grepl("NAM\\(1\\)", out)
[1] FALSE
> y = TRUE
[1] TRUE
1 element mismatch
Test 1543.3 ran without errors but failed check that x equals y:
> x = ans1
A X total.x A.y total.y
1 e 3 TRUE 9 FALSE
2 f 8 TRUE 2 FALSE
3 g 4 TRUE 1 FALSE
4 h 6 TRUE 8 FALSE
5 i 7 TRUE 5 FALSE
6 j 9 TRUE 3 FALSE
> y = ans2
A X total.x A total.y
1 e 3 TRUE 9 FALSE
2 f 8 TRUE 2 FALSE
3 g 4 TRUE 1 FALSE
4 h 6 TRUE 8 FALSE
5 i 7 TRUE 5 FALSE
6 j 9 TRUE 3 FALSE
Running test id 1696
Error in eval(exprs[i], envir) :
2 errors out of 5908 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Feb 24 15:14:17 2018. Search tests.Rraw for test numbers: 1373, 1543.3.
Calls: test.data.table -> sys.source -> eval -> eval
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.10.4-3
Check: running tests for arch ‘i386’
Result: ERROR
Running 'autoprint.R' [1s]
Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
Running 'knitr.R' [1s]
Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
Running 'main.R' [115s]
Running 'testthat.R' [2s]
Running the tests in 'tests/main.R' failed.
Last 13 lines of output:
(converted from warning) type 31 is unimplemented in 'type2str'
Test 1646.037 Error in length(ans$indices) :
(converted from warning) type 31 is unimplemented in 'type2str'
Test 1646.04 Error in length(ans$indices) :
(converted from warning) type 31 is unimplemented in 'type2str'
Test 1646.059 Error in length(ans$indices) :
(converted from warning) type 31 is unimplemented in 'type2str'
Test 1646.06 Error in length(ans$indices) :
(converted from warning) type 31 is unimplemented in 'type2str'
Test 1646.063 Error in length(ans$indices) :
(converted from warning) type 31 is unimplemented in 'type2str'
Test 1646.064 Error in length(ans$indices) :
(converted from warning) type 31 is unimplemented in 'type2str'
Error: memory exhausted (limit reached?)
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.10.4-3
Check: running tests for arch ‘x64’
Result: ERROR
Running 'autoprint.R' [1s]
Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
Running 'knitr.R' [1s]
Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
Running 'main.R' [218s]
Running 'testthat.R' [2s]
Running the tests in 'tests/main.R' failed.
Last 13 lines of output:
Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
Test 1373 ran without errors but failed check that x equals y:
> x = grepl("NAM\\(1\\)", out)
[1] FALSE
> y = TRUE
[1] TRUE
1 element mismatch
Running test id 1696
Error in eval(exprs[i], envir) :
1 error out of 5751 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Thu Feb 22 08:43:02 2018. Search tests.Rraw for test number 1373.
Calls: test.data.table -> sys.source -> eval -> eval
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.10.4-3
Check: tests
Result: ERROR
Running ‘autoprint.R’ [0s/1s]
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
Running ‘knitr.R’ [1s/2s]
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [174s/212s]
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
Running /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/tests/tests.Rraw
Loading required package: bit64
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:data.table':
setattr
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2012 Jens Oehlschlaegel
creators: integer64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:bit':
still.identical
The following objects are masked from 'package:base':
%in%, :, is.double, match, order, rank
Loading required package: knitr
Loading required package: nanotime
Loading required package: chron
Loading required package: ggplot2
Loading required package: plyr
Loading required package: reshape
Attaching package: 'reshape'
The following objects are masked from 'package:plyr':
rename, round_any
The following object is masked from 'package:data.table':
melt
Loading required package: reshape2
Attaching package: 'reshape2'
The following objects are masked from 'package:reshape':
colsplit, melt, recast
The following objects are masked from 'package:data.table':
dcast, melt
Loading required package: testthat
Loading required package: hexbin
Loading required package: fastmatch
Loading required package: nlme
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:bit64':
match, order, rank
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:reshape':
expand, rename
The following object is masked from 'package:plyr':
rename
The following objects are masked from 'package:data.table':
first, second
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:nlme':
collapse
The following object is masked from 'package:plyr':
desc
The following object is masked from 'package:data.table':
shift
Loading required package: GenomeInfoDb
Loading required package: xts
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Attaching package: 'xts'
The following object is masked from 'package:S4Vectors':
first
The following objects are masked from 'package:data.table':
first, last
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: 'gdata'
The following objects are masked from 'package:xts':
first, last
The following object is masked from 'package:GenomicRanges':
trim
The following object is masked from 'package:IRanges':
trim
The following objects are masked from 'package:S4Vectors':
first, first<-
The following object is masked from 'package:BiocGenerics':
combine
The following object is masked from 'package:stats4':
nobs
The following objects are masked from 'package:data.table':
first, last
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
Loading required package: caret
Loading required package: lattice
Loading required package: curl
Loading required package: plm
Loading required package: Formula
Attaching package: 'plm'
The following object is masked from 'package:data.table':
between
Loading required package: rmarkdown
Attaching package: 'reshape2'
The following objects are masked _by_ 'package:data.table':
dcast, melt
Attaching package: 'reshape'
The following objects are masked _by_ 'package:S4Vectors':
expand, rename
The following objects are masked _by_ 'package:plyr':
rename, round_any
The following object is masked _by_ 'package:data.table':
melt
The following objects are masked _by_ 'package:reshape2':
colsplit, melt, recast
Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Running test id 1696
Error in eval(exprs[i], envir) :
5 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Fri Feb 23 19:12:21 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1.
Calls: test.data.table -> sys.source -> eval -> eval
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.10.4-3
Check: tests
Result: ERROR
Running ‘autoprint.R’ [0s/1s]
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
Running ‘knitr.R’ [1s/1s]
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [175s/216s]
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
Running /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/data.table/tests/tests.Rraw
Loading required package: bit64
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:data.table':
setattr
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2012 Jens Oehlschlaegel
creators: integer64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:bit':
still.identical
The following objects are masked from 'package:base':
%in%, :, is.double, match, order, rank
Loading required package: knitr
Loading required package: nanotime
Loading required package: chron
Loading required package: ggplot2
Loading required package: plyr
Loading required package: reshape
Attaching package: 'reshape'
The following objects are masked from 'package:plyr':
rename, round_any
The following object is masked from 'package:data.table':
melt
Loading required package: reshape2
Attaching package: 'reshape2'
The following objects are masked from 'package:reshape':
colsplit, melt, recast
The following objects are masked from 'package:data.table':
dcast, melt
Loading required package: testthat
Loading required package: hexbin
Loading required package: fastmatch
Loading required package: nlme
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:bit64':
match, order, rank
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:reshape':
expand, rename
The following object is masked from 'package:plyr':
rename
The following objects are masked from 'package:data.table':
first, second
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:nlme':
collapse
The following object is masked from 'package:plyr':
desc
The following object is masked from 'package:data.table':
shift
Loading required package: GenomeInfoDb
Loading required package: xts
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Attaching package: 'xts'
The following object is masked from 'package:S4Vectors':
first
The following objects are masked from 'package:data.table':
first, last
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: 'gdata'
The following objects are masked from 'package:xts':
first, last
The following object is masked from 'package:GenomicRanges':
trim
The following object is masked from 'package:IRanges':
trim
The following objects are masked from 'package:S4Vectors':
first, first<-
The following object is masked from 'package:BiocGenerics':
combine
The following object is masked from 'package:stats4':
nobs
The following objects are masked from 'package:data.table':
first, last
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
Loading required package: caret
Loading required package: lattice
Loading required package: curl
Loading required package: plm
Loading required package: Formula
Attaching package: 'plm'
The following object is masked from 'package:data.table':
between
Loading required package: rmarkdown
Attaching package: 'reshape2'
The following objects are masked _by_ 'package:data.table':
dcast, melt
Attaching package: 'reshape'
The following objects are masked _by_ 'package:S4Vectors':
expand, rename
The following objects are masked _by_ 'package:plyr':
rename, round_any
The following object is masked _by_ 'package:data.table':
melt
The following objects are masked _by_ 'package:reshape2':
colsplit, melt, recast
Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
cannot open file 'Rplots.pdf'
Running test id 1696
Error in eval(exprs[i], envir) :
5 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Feb 24 07:10:57 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1.
Calls: test.data.table -> sys.source -> eval -> eval
Execution halted
Flavor: r-release-linux-x86_64