CRAN Package Check Results for Package phyloclim

Last updated on 2018-02-25 00:48:53 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-4 5.07 55.51 60.58 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-4 3.52 44.20 47.72 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-4 75.29 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-4 70.94 NOTE
r-devel-windows-ix86+x86_64 0.9-4 12.00 91.00 103.00 NOTE
r-patched-linux-x86_64 0.9-4 4.38 63.51 67.89 NOTE
r-patched-solaris-x86 0.9-4 101.40 NOTE
r-release-linux-x86_64 0.9-4 4.39 60.93 65.32 NOTE
r-release-windows-ix86+x86_64 0.9-4 13.00 97.00 110.00 NOTE
r-release-osx-x86_64 0.9-4 NOTE
r-oldrel-windows-ix86+x86_64 0.9-4 7.00 92.00 99.00 NOTE
r-oldrel-osx-x86_64 0.9-4 NOTE

Check Details

Version: 0.9-4
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘debug’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.9-4
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘raster’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.9-4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.ntest print.ntest
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.9-4
Check: R code for possible problems
Result: NOTE
    age.range.correlation: no visible global function definition for ‘lm’
    age.range.correlation : randomization: no visible global function
     definition for ‘lm’
    anc.clim: no visible binding for global variable ‘quantile’
    bg.similarity.test: no visible global function definition for
     ‘sampleRandom’
    bg.similarity.test: no visible global function definition for
     ‘coordinates’
    bg.similarity.test: no visible global function definition for ‘slot’
    bg.similarity.test: no visible global function definition for ‘extract’
    bg.similarity.test: no visible global function definition for
     ‘SpatialPoints’
    bg.similarity.test : random.presence: no visible global function
     definition for ‘sampleRandom’
    bg.similarity.test : random.presence: no visible global function
     definition for ‘coordinates’
    bg.similarity.test : random.presence: no visible global function
     definition for ‘slot’
    bg.similarity.test: no visible global function definition for
     ‘write.table’
    bg.similarity.test: no visible global function definition for ‘unstack’
    bg.similarity.test: no visible global function definition for
     ‘writeRaster’
    bg.similarity.test: no visible global function definition for
     ‘read.asciigrid’
    bg.similarity.test: no visible binding for global variable ‘quantile’
    di.enm: no visible global function definition for ‘read.asciigrid’
    di.enm: no visible global function definition for ‘slot’
    import.asc: no visible global function definition for ‘read.table’
    niche.equivalency.test: no visible global function definition for
     ‘extract’
    niche.equivalency.test: no visible global function definition for
     ‘SpatialPoints’
    niche.equivalency.test: no visible global function definition for
     ‘sampleRandom’
    niche.equivalency.test: no visible global function definition for
     ‘coordinates’
    niche.equivalency.test: no visible global function definition for
     ‘slot’
    niche.equivalency.test: no visible global function definition for
     ‘write.table’
    niche.equivalency.test: no visible global function definition for
     ‘unstack’
    niche.equivalency.test: no visible global function definition for
     ‘writeRaster’
    niche.equivalency.test: no visible global function definition for
     ‘read.asciigrid’
    niche.equivalency.test: no visible binding for global variable ‘sd’
    niche.equivalency.test: no visible global function definition for
     ‘pnorm’
    niche.overlap: no visible global function definition for
     ‘read.asciigrid’
    plot.ntest: no visible global function definition for ‘par’
    plot.ntest: no visible global function definition for ‘hist’
    plot.ntest: no visible global function definition for ‘lines’
    plot.ntest: no visible global function definition for ‘text’
    plot.ntest: no visible global function definition for ‘title’
    plotAncClim : abb: no visible global function definition for ‘head’
    plotAncClim: no visible global function definition for ‘plot’
    plotAncClim: no visible global function definition for ‘strwidth’
    plotAncClim: no visible global function definition for ‘rainbow’
    plotAncClim: no visible global function definition for ‘lines’
    plotAncClim: no visible global function definition for ‘text’
    plotAncClim: no visible global function definition for ‘points’
    plotAncClim: no visible global function definition for ‘strheight’
    plotPNO: no visible global function definition for ‘rainbow’
    plotPNO: no visible global function definition for ‘plot’
    plotPNO: no visible global function definition for ‘lines’
    plotPNO: no visible global function definition for ‘legend’
    pno: no visible global function definition for ‘read.table’
    Undefined global functions or variables:
     SpatialPoints coordinates extract head hist legend lines lm par plot
     pnorm points quantile rainbow read.asciigrid read.table sampleRandom
     sd slot strheight strwidth text title unstack write.table writeRaster
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "hist", "legend", "lines", "par", "plot",
     "points", "strheight", "strwidth", "text", "title")
     importFrom("methods", "slot")
     importFrom("stats", "lm", "pnorm", "quantile", "sd")
     importFrom("utils", "head", "read.table", "unstack", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64