Contains functions for importing and exporting 'dendrogram' objects in parenthetic text format, and several functions for command-line tree manipulation. With an emphasis on speed and computational efficiency, the package also includes a suite of tools for rapidly computing distance matrices and building large trees using fast alignment-free 'k-mer' counting and divisive clustering techniques.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.0.0) |
| Imports: | openssl, Rcpp (≥ 0.12.8), stats |
| LinkingTo: | Rcpp |
| Suggests: | ape (≥ 3.0), knitr, rmarkdown, testthat |
| Published: | 2017-06-14 |
| Author: | Shaun Wilkinson [aut, cre] |
| Maintainer: | Shaun Wilkinson <shaunpwilkinson at gmail.com> |
| BugReports: | http://github.com/shaunpwilkinson/phylogram/issues |
| License: | GPL-3 |
| URL: | http://github.com/shaunpwilkinson/phylogram |
| NeedsCompilation: | yes |
| Citation: | phylogram citation info |
| Materials: | README |
| CRAN checks: | phylogram results |
| Reference manual: | phylogram.pdf |
| Vignettes: |
Introduction to the phylogram package |
| Package source: | phylogram_1.0.1.tar.gz |
| Windows binaries: | r-devel: phylogram_1.0.1.zip, r-release: phylogram_1.0.1.zip, r-oldrel: phylogram_1.0.1.zip |
| OS X El Capitan binaries: | r-release: phylogram_1.0.1.tgz |
| OS X Mavericks binaries: | r-oldrel: phylogram_1.0.1.tgz |
| Old sources: | phylogram archive |
| Reverse imports: | aphid |
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