Tools for the exploration of distributions of phylogenetic trees. This package includes a 'shiny' interface which can be started from R using treespaceServer().
| Version: | 1.1.2 |
| Depends: | R (≥ 3.4.0), ape, ade4 |
| Imports: | adegenet, adegraphics, adephylo, combinat, compiler, distory, fields, htmlwidgets, MASS, parallel, phangorn, phytools, Rcpp, RLumShiny, scatterD3, shiny, shinyBS, utils |
| LinkingTo: | Rcpp |
| Suggests: | ggplot2, igraph, knitr, pander, RColorBrewer, reshape2, rgl, rmarkdown, testthat |
| Published: | 2018-02-22 |
| Author: | Thibaut Jombart [aut], Michelle Kendall [aut, cre], Jacob Almagro-Garcia [aut], Caroline Colijn [aut] |
| Maintainer: | Michelle Kendall <michelle.kendall at bdi.ox.ac.uk> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | treespace results |
| Reference manual: | treespace.pdf |
| Vignettes: |
treespace worked example: Dengue trees treespace worked example: Transmission trees treespace: exploration of landscapes of phylogenetic trees treespace worked example: comparing by tip categories |
| Package source: | treespace_1.1.2.tar.gz |
| Windows binaries: | r-devel: treespace_1.1.2.zip, r-release: treespace_1.1.1.zip, r-oldrel: treespace_1.1.1.zip |
| OS X El Capitan binaries: | r-release: treespace_1.1.2.tgz |
| OS X Mavericks binaries: | r-oldrel: treespace_1.0.1.tgz |
| Old sources: | treespace archive |
Please use the canonical form https://CRAN.R-project.org/package=treespace to link to this page.