CRAN Package Check Results for Package MM

Last updated on 2018-04-29 01:47:10 CEST.

Check Details

Version: 1.6-2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.6-2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘Oarray’ ‘emulator’ ‘magic’ ‘methods’ ‘partitions’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.6-2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     as.array.MB as.array.gunter_MB summary.suffstats
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.6-2
Check: R code for possible problems
Result: NOTE
    .Oarray_to_MB: no visible global function definition for ‘is.Oarray’
    .gunter: no visible global function definition for ‘minmax’
    .gunter: no visible global function definition for ‘compositions’
    Lindsey: no visible global function definition for ‘glm’
    Lindsey: no visible binding for global variable ‘poisson’
    Lindsey_MB: no visible global function definition for ‘glm’
    Lindsey_MB: no visible binding for global variable ‘poisson’
    MB: no visible global function definition for ‘new’
    MM: no visible global function definition for ‘minmax’
    MM_allsamesum: no visible global function definition for ‘quad.tform’
    MM_allsamesum_A: no visible global function definition for ‘minmax’
    MM_allsamesum_A: no visible global function definition for ‘tr’
    MM_allsamesum_A: no visible global function definition for ‘quad.tform’
    MM_differsums: no visible global function definition for ‘quad.tform’
    MM_single: no visible global function definition for ‘quad.form’
    NormC: no visible global function definition for ‘compositions’
    as.array.gunter_MB: no visible global function definition for ‘Oarray’
    expected_suffstats: no visible global function definition for
     ‘compositions’
    optimizer: no visible global function definition for ‘minmax’
    optimizer_allsamesum: no visible global function definition for
     ‘minmax’
    optimizer_allsamesum: no visible global function definition for ‘is’
    optimizer_allsamesum: no visible global function definition for ‘optim’
    optimizer_allsamesum: no visible global function definition for ‘nlm’
    optimizer_differsums: no visible global function definition for ‘is’
    optimizer_differsums: no visible global function definition for ‘optim’
    optimizer_differsums: no visible global function definition for ‘nlm’
    paras: no visible global function definition for ‘new’
    rMM : update: no visible global function definition for ‘runif’
    suffstats: no visible global function definition for ‘minmax’
    gunter,data.frame: no visible global function definition for ‘minmax’
    gunter,data.frame: no visible global function definition for
     ‘compositions’
    gunter,matrix: no visible global function definition for ‘minmax’
    gunter,matrix: no visible global function definition for ‘compositions’
    Undefined global functions or variables:
     Oarray compositions glm is is.Oarray minmax new nlm optim poisson
     quad.form quad.tform runif tr
    Consider adding
     importFrom("methods", "is", "new")
     importFrom("stats", "glm", "nlm", "optim", "poisson", "runif")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.6-2
Check: examples
Result: ERROR
    Running examples in ‘MM-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: MB
    > ### Title: Multivariate multiplicative binomial distribution
    > ### Aliases: MB MB-class as.array.MB as.array.gunter_MB print.gunter_MB
    > ### counts,MB-method counts getM,MB-method getM
    >
    > ### ** Examples
    >
    >
    > a <- matrix(c(1,0,0, 1,0,0, 1,1,1, 2,3,1, 2,0,1),5,3,byrow=TRUE)
    > m <- c(2,3,1)
    > mx <- MB(a, m, letters[1:3]) # mx is of class 'MB'; column headings
    > # mean "a" and "not a".
    > ax <- as.array(mx)
    Error in dim(x) <- length(x) : invalid first argument
    Calls: as.array -> as.array.default
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.6-2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: magic
    Loading required package: abind
    Loading required package: partitions
    Loading required package: emulator
    Loading required package: mvtnorm
    Loading required package: Oarray
    Warning: glm.fit: fitted rates numerically 0 occurred
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'Gianfranco.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `dsfont.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.4 \usepackage
     {bbm}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64