CRAN Package Check Results for Package Mega2R

Last updated on 2018-04-29 01:47:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 36.36 359.63 395.99 OK
r-devel-linux-x86_64-debian-gcc 1.0.2 36.37 329.14 365.51 OK
r-devel-linux-x86_64-fedora-clang 1.0.2 289.05 OK --no-vignettes
r-devel-linux-x86_64-fedora-gcc 1.0.2 292.73 OK --no-vignettes
r-devel-windows-ix86+x86_64 1.0.2 83.00 578.00 661.00 OK
r-patched-linux-x86_64 1.0.2 40.73 359.42 400.15 OK
r-patched-solaris-x86 1.0.2 409.00 OK --no-vignettes
r-release-linux-x86_64 1.0.2 36.41 351.67 388.08 OK
r-release-windows-ix86+x86_64 1.0.2 83.00 578.00 661.00 OK
r-release-osx-x86_64 1.0.2 WARN
r-oldrel-windows-ix86+x86_64 1.0.2 58.00 420.00 478.00 OK
r-oldrel-osx-x86_64 1.0.2 WARN

Check Details

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Flavor: r-release-osx-x86_64

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: GenABEL
    Loading required package: MASS
    Loading required package: GenABEL.data
    Loading required package: SKAT
    Loading required package: pedgene
    Loading required package: Matrix
    Loading required package: CompQuadForm
    Loading required package: survey
    Loading required package: grid
    Loading required package: survival
    
    Attaching package: 'survey'
    
    The following object is masked from 'package:graphics':
    
     dotchart
    
    Loading required package: kinship2
    Loading required package: quadprog
    Quitting from lines 694-696 (mega2rtutorial.Rmd)
    Error: processing vignette 'mega2rtutorial.Rmd' failed with diagnostics:
    there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ ‘org.Hs.eg.db’
Flavor: r-oldrel-osx-x86_64