CRAN Package Check Results for Package PairViz

Last updated on 2018-04-29 01:47:13 CEST.

Check Details

Version: 1.2.1
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    catpcp: no visible global function definition for ‘par’
    catpcp: no visible global function definition for ‘rect’
    catpcp: no visible global function definition for ‘text’
    catpcp: no visible global function definition for ‘axis’
    desaturate_color: no visible global function definition for ‘col2rgb’
    desaturate_color: no visible global function definition for ‘rgb2hsv’
    desaturate_color: no visible global function definition for ‘hsv’
    dist2edge: no visible global function definition for ‘as.dist’
    edge2dist: no visible global function definition for ‘as.dist’
    etour: no visible global function definition for ‘is’
    etour: no visible global function definition for ‘as’
    etour_ns: no visible global function definition for ‘is’
    etour_ns: no visible global function definition for ‘as’
    graph_compose: no visible global function definition for ‘new’
    graph_product: no visible global function definition for ‘new’
    graph_sum: no visible global function definition for ‘na.omit’
    guided_pcp: no visible global function definition for ‘layout’
    guided_pcp: no visible global function definition for ‘par’
    guided_pcp: no visible global function definition for ‘plot.new’
    guided_pcp: no visible global function definition for ‘barplot’
    iterated_line_graph: no visible global function definition for ‘new’
    kn: no visible global function definition for ‘new’
    kne: no visible global function definition for ‘new’
    kne: no visible global function definition for ‘as’
    kspace_graph: no visible global function definition for ‘combn’
    kspace_graph: no visible global function definition for ‘new’
    mc_plot: no visible global function definition for ‘rainbow’
    mc_plot : <anonymous>: no visible global function definition for
     ‘TukeyHSD’
    mc_plot: no visible global function definition for ‘boxplot’
    mk_binary_graph: no visible global function definition for ‘new’
    mk_complete_graph: no visible global function definition for ‘new’
    mk_line_graph: no visible global function definition for ‘new’
    overlayCI: no visible global function definition for ‘par’
    overlayCI: no visible global function definition for ‘gray.colors’
    overlayCI: no visible global function definition for ‘lines’
    overlayCI: no visible global function definition for ‘arrows’
    overlayCI: no visible global function definition for ‘points’
    overlayCI: no visible global function definition for ‘axis’
    path_cor: no visible global function definition for ‘cor’
    pcp: no visible global function definition for ‘par’
    pcp: no visible global function definition for ‘matplot’
    pcp: no visible global function definition for ‘axis’
    pcp: no visible global function definition for ‘rect’
    pcp: no visible global function definition for ‘lines’
    pcp: no visible global function definition for ‘matpoints’
    sort_edges: no visible global function definition for ‘new’
    sort_edges: no visible global function definition for ‘as’
    table_plot: no visible global function definition for ‘lines’
    table_plot: no visible global function definition for ‘points’
    table_plot: no visible global function definition for ‘rect’
    table_plot: no visible global function definition for ‘axis’
    table_plot: no visible global function definition for ‘na.omit’
    eulerian,matrix: no visible global function definition for ‘as.dist’
    mk_even_graph,graphNEL: no visible global function definition for ‘as’
    mk_even_graph,graphNEL: no visible global function definition for ‘new’
    Undefined global functions or variables:
     TukeyHSD arrows as as.dist axis barplot boxplot col2rgb combn cor
     gray.colors hsv is layout lines matplot matpoints na.omit new par
     plot.new points rainbow rect rgb2hsv text
    Consider adding
     importFrom("grDevices", "col2rgb", "gray.colors", "hsv", "rainbow",
     "rgb2hsv")
     importFrom("graphics", "arrows", "axis", "barplot", "boxplot",
     "layout", "lines", "matplot", "matpoints", "par",
     "plot.new", "points", "rect", "text")
     importFrom("methods", "as", "is", "new")
     importFrom("stats", "TukeyHSD", "as.dist", "cor", "na.omit")
     importFrom("utils", "combn")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.1
Check: Rd line widths
Result: NOTE
    Rd file 'etour.Rd':
     \examples lines wider than 100 characters:
     eulerian(6) # The eulerian wrapper looks after making even graph, also returns numbers rather than nodes
    
    Rd file 'hpaths.Rd':
     \examples lines wider than 100 characters:
     # Form a decomposition into hamiltonian cycles- this decomposition is not exact, as the last row duplicates edges
     # If cycles are required for even n, the decomposition will not be exact and the last row duplicates edges
    
    Rd file 'mc_plot.Rd':
     \usage lines wider than 90 characters:
     mc_plot(data, fit, path = eulerian, col = rainbow(length(data), s = 0.4), levels = c(0.9, 0.95, 0.99),
     varwidth = TRUE, frame.plot = FALSE, boxwex = 0.3, cex=0.75, zoom=NULL,ci.yusr=NULL,ci.pos=FALSE,...)
    
    Rd file 'order_best.Rd':
     \usage lines wider than 90 characters:
     order_best(d, maxexact=9,nsamples=50000,path_weight=sum,cycle=FALSE,path_dir = path_cor,...)
    
    Rd file 'overlayci.Rd':
     \usage lines wider than 90 characters:
     overlayCI(cis, xpos=NULL,ci.cols = NULL, ci.ex = 2, ci.ocol = "grey40", p.col = "grey40", pch = 1, sig.col = "red", sig.lwd = 1, yusr = ... [TRUNCATED]
    
    Rd file 'pcp.Rd':
     \usage lines wider than 90 characters:
     pcp(data, order = NULL, panel.colors = NULL, col = 1, lty = 1, horizontal = TRUE, mar = NULL, scale = TRUE, axis.width = 0,axis.grid.co ... [TRUNCATED]
     catpcp(data, order = NULL, pcpbars, barvars = 1:ncol(data), pcpbars.border = "black", pcpbars.col = NULL, pcpbars.labels = FALSE, pcpba ... [TRUNCATED]
    
    Rd file 'tableplot.Rd':
     \usage lines wider than 90 characters:
     table_plot(rectw, recth, col="grey50", gapx = NULL, gapy = NULL, spacex = 0.03, spacey = 0.03, xjust = "center", yjust = "center", xrul ... [TRUNCATED]
     \examples lines wider than 100 characters:
     table_plot(apply(tab,2,sum),tabp) # make cell widths proportional to margin totals, heights to conditional prob
     table_plot(apply(tab,2,sum),tabp, yjust="bottom",col=cols,yruler=c("left","right")) # add colours, rulers and bottom-justify
     # The result is similar to the mosaic, without the mosaic effect of equalizing gaps. In the table version the rectangles line up across ... [TRUNCATED]
     # Permutes the columns so all pairs of columns can be compared. In the second permutation can easily see that p(black|blue eyes)> p(b ... [TRUNCATED]
    
    Rd file 'whpaths.Rd':
     \usage lines wider than 90 characters:
     weighted_hpaths(d, path1 = NULL, paths=NULL, matrix=TRUE, cycle=NULL, path_weight=sum, path_dir = path_cor,...)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64