CRAN Package Check Results for Package data.table

Last updated on 2018-04-29 01:46:41 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.10.4-3 22.81 256.77 279.58 ERROR
r-devel-linux-x86_64-debian-gcc 1.10.4-3 21.06 205.84 226.90 ERROR
r-devel-linux-x86_64-fedora-clang 1.10.4-3 333.34 ERROR
r-devel-linux-x86_64-fedora-gcc 1.10.4-3 320.62 ERROR
r-devel-windows-ix86+x86_64 1.10.4-3 106.00 552.00 658.00 ERROR
r-patched-linux-x86_64 1.10.4-3 29.54 233.01 262.55 ERROR
r-patched-solaris-x86 1.10.4-3 458.70 ERROR
r-release-linux-x86_64 1.10.4-3 28.50 235.82 264.32 ERROR
r-release-windows-ix86+x86_64 1.10.4-3 106.00 552.00 658.00 ERROR
r-release-osx-x86_64 1.10.4-3 ERROR
r-oldrel-windows-ix86+x86_64 1.10.4-3 74.00 534.00 608.00 OK
r-oldrel-osx-x86_64 1.10.4-3 NOTE

Additional issues

rchk valgrind

Check Details

Version: 1.10.4-3
Check: examples
Result: ERROR
    Running examples in ‘data.table-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: IDateTime
    > ### Title: Integer based date class
    > ### Aliases: IDate as.IDate ITime as.ITime IDateTime as.character.ITime
    > ### as.chron.IDate as.chron.ITime as.Date.IDate as.IDate.Date
    > ### as.IDate.default as.ITime.character as.ITime.default as.ITime.POSIXlt
    > ### as.ITime.times as.list.IDate as.POSIXct.IDate as.POSIXct.ITime
    > ### as.POSIXlt.ITime c.IDate cut.IDate format.ITime IDateTime.default
    > ### mean.IDate print.ITime rep.IDate rep.ITime round.IDate seq.IDate
    > ### split.IDate second minute hour yday wday mday week isoweek month
    > ### quarter year IDate-class ITime-class
    > ### Keywords: utilities chron
    >
    > ### ** Examples
    >
    >
    > # create IDate:
    > (d <- as.IDate("2001-01-01"))
    [1] "2001-01-01"
    >
    > # S4 coercion also works
    > identical(as.IDate("2001-01-01"), as("2001-01-01", "IDate"))
    [1] TRUE
    >
    > # create ITime:
    > (t <- as.ITime("10:45"))
    [1] "10:45:00"
    >
    > # S4 coercion also works
    > identical(as.ITime("10:45"), as("10:45", "ITime"))
    [1] TRUE
    >
    > (t <- as.ITime("10:45:04"))
    [1] "10:45:04"
    >
    > (t <- as.ITime("10:45:04", format = "%H:%M:%S"))
    [1] "10:45:04"
    >
    > as.POSIXct("2001-01-01") + as.ITime("10:45")
    [1] "2001-01-01 10:45:00 CET"
    >
    > datetime <- seq(as.POSIXct("2001-01-01"), as.POSIXct("2001-01-03"), by = "5 hour")
    > (af <- data.table(IDateTime(datetime), a = rep(1:2, 5), key = "a,idate,itime"))
     idate itime a
     1: 2001-01-01 00:00:00 1
     2: 2001-01-01 10:00:00 1
     3: 2001-01-01 20:00:00 1
     4: 2001-01-02 06:00:00 1
     5: 2001-01-02 16:00:00 1
     6: 2001-01-01 05:00:00 2
     7: 2001-01-01 15:00:00 2
     8: 2001-01-02 01:00:00 2
     9: 2001-01-02 11:00:00 2
    10: 2001-01-02 21:00:00 2
    >
    > af[, mean(a), by = "itime"]
     itime V1
     1: 00:00:00 1
     2: 10:00:00 1
     3: 20:00:00 1
     4: 06:00:00 1
     5: 16:00:00 1
     6: 05:00:00 2
     7: 15:00:00 2
     8: 01:00:00 2
     9: 11:00:00 2
    10: 21:00:00 2
    > af[, mean(a), by = list(hour = hour(itime))]
     hour V1
     1: 0 1
     2: 10 1
     3: 20 1
     4: 6 1
     5: 16 1
     6: 5 2
     7: 15 2
     8: 1 2
     9: 11 2
    10: 21 2
    > af[, mean(a), by = list(wday = factor(weekdays(idate)))]
     wday V1
    1: Monday 1.4
    2: Tuesday 1.6
    > af[, mean(a), by = list(wday = wday(idate))]
     wday V1
    1: 2 1.4
    2: 3 1.6
    >
    > as.POSIXct(af$idate)
     [1] "2001-01-01 UTC" "2001-01-01 UTC" "2001-01-01 UTC" "2001-01-02 UTC"
     [5] "2001-01-02 UTC" "2001-01-01 UTC" "2001-01-01 UTC" "2001-01-02 UTC"
     [9] "2001-01-02 UTC" "2001-01-02 UTC"
    > as.POSIXct(af$idate, time = af$itime)
     [1] "2001-01-01 00:00:00 UTC" "2001-01-01 10:00:00 UTC"
     [3] "2001-01-01 20:00:00 UTC" "2001-01-02 06:00:00 UTC"
     [5] "2001-01-02 16:00:00 UTC" "2001-01-01 05:00:00 UTC"
     [7] "2001-01-01 15:00:00 UTC" "2001-01-02 01:00:00 UTC"
     [9] "2001-01-02 11:00:00 UTC" "2001-01-02 21:00:00 UTC"
    > as.POSIXct(af$idate, af$itime)
     [1] "2001-01-01 00:00:00 UTC" "2001-01-01 10:00:00 UTC"
     [3] "2001-01-01 20:00:00 UTC" "2001-01-02 06:00:00 UTC"
     [5] "2001-01-02 16:00:00 UTC" "2001-01-01 05:00:00 UTC"
     [7] "2001-01-01 15:00:00 UTC" "2001-01-02 01:00:00 UTC"
     [9] "2001-01-02 11:00:00 UTC" "2001-01-02 21:00:00 UTC"
    > as.POSIXct(af$idate, time = af$itime, tz = "GMT")
     [1] "2001-01-01 00:00:00 GMT" "2001-01-01 10:00:00 GMT"
     [3] "2001-01-01 20:00:00 GMT" "2001-01-02 06:00:00 GMT"
     [5] "2001-01-02 16:00:00 GMT" "2001-01-01 05:00:00 GMT"
     [7] "2001-01-01 15:00:00 GMT" "2001-01-02 01:00:00 GMT"
     [9] "2001-01-02 11:00:00 GMT" "2001-01-02 21:00:00 GMT"
    >
    > as.POSIXct(af$itime, af$idate)
     [1] "2001-01-01 00:00:00 UTC" "2001-01-01 10:00:00 UTC"
     [3] "2001-01-01 20:00:00 UTC" "2001-01-02 06:00:00 UTC"
     [5] "2001-01-02 16:00:00 UTC" "2001-01-01 05:00:00 UTC"
     [7] "2001-01-01 15:00:00 UTC" "2001-01-02 01:00:00 UTC"
     [9] "2001-01-02 11:00:00 UTC" "2001-01-02 21:00:00 UTC"
    > as.POSIXct(af$itime) # uses today's date
     [1] "2018-04-27 00:00:00 UTC" "2018-04-27 10:00:00 UTC"
     [3] "2018-04-27 20:00:00 UTC" "2018-04-27 06:00:00 UTC"
     [5] "2018-04-27 16:00:00 UTC" "2018-04-27 05:00:00 UTC"
     [7] "2018-04-27 15:00:00 UTC" "2018-04-27 01:00:00 UTC"
     [9] "2018-04-27 11:00:00 UTC" "2018-04-27 21:00:00 UTC"
    >
    > (seqdates <- seq(as.IDate("2001-01-01"), as.IDate("2001-08-03"), by = "3 weeks"))
     [1] "2001-01-01" "2001-01-22" "2001-02-12" "2001-03-05" "2001-03-26"
     [6] "2001-04-16" "2001-05-07" "2001-05-28" "2001-06-18" "2001-07-09"
    [11] "2001-07-30"
    > round(seqdates, "months")
     [1] "2001-01-01" "2001-01-01" "2001-02-01" "2001-03-01" "2001-03-01"
     [6] "2001-04-01" "2001-05-01" "2001-05-01" "2001-06-01" "2001-07-01"
    [11] "2001-07-01"
    >
    > if (require(chron)) {
    + as.chron(as.IDate("2000-01-01"))
    + as.chron(as.ITime("10:45"))
    + as.chron(as.IDate("2000-01-01"), as.ITime("10:45"))
    + as.chron(as.ITime("10:45"), as.IDate("2000-01-01"))
    + as.ITime(chron(times = "11:01:01"))
    + IDateTime(chron("12/31/98","10:45:00"))
    + }
    Loading required package: chron
    Error in strptime(x, format, tz = tz) : invalid 'x' argument
    Calls: as.chron ... as.POSIXct -> as.POSIXlt -> as.POSIXlt.character -> strptime
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [178s/211s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     7 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Fri Apr 27 07:31:15 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1, 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.10.4-3
Check: examples
Result: ERROR
    Running examples in ‘data.table-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: IDateTime
    > ### Title: Integer based date class
    > ### Aliases: IDate as.IDate ITime as.ITime IDateTime as.character.ITime
    > ### as.chron.IDate as.chron.ITime as.Date.IDate as.IDate.Date
    > ### as.IDate.default as.ITime.character as.ITime.default as.ITime.POSIXlt
    > ### as.ITime.times as.list.IDate as.POSIXct.IDate as.POSIXct.ITime
    > ### as.POSIXlt.ITime c.IDate cut.IDate format.ITime IDateTime.default
    > ### mean.IDate print.ITime rep.IDate rep.ITime round.IDate seq.IDate
    > ### split.IDate second minute hour yday wday mday week isoweek month
    > ### quarter year IDate-class ITime-class
    > ### Keywords: utilities chron
    >
    > ### ** Examples
    >
    >
    > # create IDate:
    > (d <- as.IDate("2001-01-01"))
    [1] "2001-01-01"
    >
    > # S4 coercion also works
    > identical(as.IDate("2001-01-01"), as("2001-01-01", "IDate"))
    [1] TRUE
    >
    > # create ITime:
    > (t <- as.ITime("10:45"))
    [1] "10:45:00"
    >
    > # S4 coercion also works
    > identical(as.ITime("10:45"), as("10:45", "ITime"))
    [1] TRUE
    >
    > (t <- as.ITime("10:45:04"))
    [1] "10:45:04"
    >
    > (t <- as.ITime("10:45:04", format = "%H:%M:%S"))
    [1] "10:45:04"
    >
    > as.POSIXct("2001-01-01") + as.ITime("10:45")
    [1] "2001-01-01 10:45:00 CET"
    >
    > datetime <- seq(as.POSIXct("2001-01-01"), as.POSIXct("2001-01-03"), by = "5 hour")
    > (af <- data.table(IDateTime(datetime), a = rep(1:2, 5), key = "a,idate,itime"))
     idate itime a
     1: 2001-01-01 00:00:00 1
     2: 2001-01-01 10:00:00 1
     3: 2001-01-01 20:00:00 1
     4: 2001-01-02 06:00:00 1
     5: 2001-01-02 16:00:00 1
     6: 2001-01-01 05:00:00 2
     7: 2001-01-01 15:00:00 2
     8: 2001-01-02 01:00:00 2
     9: 2001-01-02 11:00:00 2
    10: 2001-01-02 21:00:00 2
    >
    > af[, mean(a), by = "itime"]
     itime V1
     1: 00:00:00 1
     2: 10:00:00 1
     3: 20:00:00 1
     4: 06:00:00 1
     5: 16:00:00 1
     6: 05:00:00 2
     7: 15:00:00 2
     8: 01:00:00 2
     9: 11:00:00 2
    10: 21:00:00 2
    > af[, mean(a), by = list(hour = hour(itime))]
     hour V1
     1: 0 1
     2: 10 1
     3: 20 1
     4: 6 1
     5: 16 1
     6: 5 2
     7: 15 2
     8: 1 2
     9: 11 2
    10: 21 2
    > af[, mean(a), by = list(wday = factor(weekdays(idate)))]
     wday V1
    1: Monday 1.4
    2: Tuesday 1.6
    > af[, mean(a), by = list(wday = wday(idate))]
     wday V1
    1: 2 1.4
    2: 3 1.6
    >
    > as.POSIXct(af$idate)
     [1] "2001-01-01 UTC" "2001-01-01 UTC" "2001-01-01 UTC" "2001-01-02 UTC"
     [5] "2001-01-02 UTC" "2001-01-01 UTC" "2001-01-01 UTC" "2001-01-02 UTC"
     [9] "2001-01-02 UTC" "2001-01-02 UTC"
    > as.POSIXct(af$idate, time = af$itime)
     [1] "2001-01-01 00:00:00 UTC" "2001-01-01 10:00:00 UTC"
     [3] "2001-01-01 20:00:00 UTC" "2001-01-02 06:00:00 UTC"
     [5] "2001-01-02 16:00:00 UTC" "2001-01-01 05:00:00 UTC"
     [7] "2001-01-01 15:00:00 UTC" "2001-01-02 01:00:00 UTC"
     [9] "2001-01-02 11:00:00 UTC" "2001-01-02 21:00:00 UTC"
    > as.POSIXct(af$idate, af$itime)
     [1] "2001-01-01 00:00:00 UTC" "2001-01-01 10:00:00 UTC"
     [3] "2001-01-01 20:00:00 UTC" "2001-01-02 06:00:00 UTC"
     [5] "2001-01-02 16:00:00 UTC" "2001-01-01 05:00:00 UTC"
     [7] "2001-01-01 15:00:00 UTC" "2001-01-02 01:00:00 UTC"
     [9] "2001-01-02 11:00:00 UTC" "2001-01-02 21:00:00 UTC"
    > as.POSIXct(af$idate, time = af$itime, tz = "GMT")
     [1] "2001-01-01 00:00:00 GMT" "2001-01-01 10:00:00 GMT"
     [3] "2001-01-01 20:00:00 GMT" "2001-01-02 06:00:00 GMT"
     [5] "2001-01-02 16:00:00 GMT" "2001-01-01 05:00:00 GMT"
     [7] "2001-01-01 15:00:00 GMT" "2001-01-02 01:00:00 GMT"
     [9] "2001-01-02 11:00:00 GMT" "2001-01-02 21:00:00 GMT"
    >
    > as.POSIXct(af$itime, af$idate)
     [1] "2001-01-01 00:00:00 UTC" "2001-01-01 10:00:00 UTC"
     [3] "2001-01-01 20:00:00 UTC" "2001-01-02 06:00:00 UTC"
     [5] "2001-01-02 16:00:00 UTC" "2001-01-01 05:00:00 UTC"
     [7] "2001-01-01 15:00:00 UTC" "2001-01-02 01:00:00 UTC"
     [9] "2001-01-02 11:00:00 UTC" "2001-01-02 21:00:00 UTC"
    > as.POSIXct(af$itime) # uses today's date
     [1] "2018-04-28 00:00:00 UTC" "2018-04-28 10:00:00 UTC"
     [3] "2018-04-28 20:00:00 UTC" "2018-04-28 06:00:00 UTC"
     [5] "2018-04-28 16:00:00 UTC" "2018-04-28 05:00:00 UTC"
     [7] "2018-04-28 15:00:00 UTC" "2018-04-28 01:00:00 UTC"
     [9] "2018-04-28 11:00:00 UTC" "2018-04-28 21:00:00 UTC"
    >
    > (seqdates <- seq(as.IDate("2001-01-01"), as.IDate("2001-08-03"), by = "3 weeks"))
     [1] "2001-01-01" "2001-01-22" "2001-02-12" "2001-03-05" "2001-03-26"
     [6] "2001-04-16" "2001-05-07" "2001-05-28" "2001-06-18" "2001-07-09"
    [11] "2001-07-30"
    > round(seqdates, "months")
     [1] "2001-01-01" "2001-01-01" "2001-02-01" "2001-03-01" "2001-03-01"
     [6] "2001-04-01" "2001-05-01" "2001-05-01" "2001-06-01" "2001-07-01"
    [11] "2001-07-01"
    >
    > if (require(chron)) {
    + as.chron(as.IDate("2000-01-01"))
    + as.chron(as.ITime("10:45"))
    + as.chron(as.IDate("2000-01-01"), as.ITime("10:45"))
    + as.chron(as.ITime("10:45"), as.IDate("2000-01-01"))
    + as.ITime(chron(times = "11:01:01"))
    + IDateTime(chron("12/31/98","10:45:00"))
    + }
    Loading required package: chron
    Error in strptime(x, format, tz = tz) : invalid 'x' argument
    Calls: as.chron ... as.POSIXct -> as.POSIXlt -> as.POSIXlt.character -> strptime
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [141s/195s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
     pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
     rownames, sapply, setdiff, sort, table, tapply, union, unique,
     unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     7 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Apr 28 18:33:59 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1, 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [203s/212s]
     Running ‘testthat.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     2 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Apr 21 13:38:08 2018. Search tests.Rraw for test numbers: 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [195s/216s]
     Running ‘testthat.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     2 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sun Apr 22 13:28:01 2018. Search tests.Rraw for test numbers: 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.10.4-3
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [192s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running D:/temp/RtmpG2phfJ/RLIBS_32d28547f44ab/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     The following object is masked from 'package:grDevices':
    
     windows
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: Unable to load perl libaries needed by read.xls()
     gdata: to support 'XLSX' (Excel 2007+) files.
    
     gdata: Run the function 'installXLSXsupport()'
     gdata: to automatically download and install the perl
     gdata: libaries needed to support Excel XLS and XLSX formats.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Test 1288.1 didn't produce correct error :
     > rbindlist(ll, use.names = TRUE)
     Expected error: 'use.names=TRUE but no item of input list has any names.'
     Observed error: 'cannot set attribute on a symbol'
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     Test 1641.003 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1641.005 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1641.006 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.024 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.028 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.047 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.048 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.05 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.054 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.058 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.072 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1642.073 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1644.005 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1644.026 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1644.027 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1644.029 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1644.05 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1644.07 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1644.084 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1644.089 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1645.008 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1645.013 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.014 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.03 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.033 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.037 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.04 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.052 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.054 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.056 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.057 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.059 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.07 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.072 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.075 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.076 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.089 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1648.017 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1648.033 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1648.034 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1648.045 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1648.062 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1650.024 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1650.034 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1650.035 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1650.045 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1650.054 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1650.08 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1651.003 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.024 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.025 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.027 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.035 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.049 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.059 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.063 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1652.075 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     60 errors out of 5744 (lastID=1751, endian==little, sizeof(long double)==12, sizeof(pointer)==4) in inst/tests/tests.Rraw on Wed Apr 25 23:35:39 2018. Search tests.Rraw for test numbers: 1288.1, 1373, 1543.3, 1641.003, 1641.005, 1641.006, 1642.024, 1642.028, 1642.047, 1642.048, 1642.05, 1642.054, 1642.058, 1642.072, 1642.073, 1644.005, 1644.026, 1644.027, 1644.029, 1644.05, 1644.07, 1644.084, 1644.089, 1645.008, 1645.013, 1646.014, 1646.03, 1646.033, 1646.037, 1646.04, 1646.052, 1646.054, 1646.056, 1646.057, 1646.059, 1646.07, 1646.072, 1646.075, 1646.076, 1646.089, 1648.017, 1648.033, 1648.034, 1648.045, 1648.062, 1650.024, 1650.034, 1650.035, 1650.045, 1650.054, 1650.08, 1651.003, 1652.024, 1652.025, 1652.027, 1652.035, 1652.049, 1652.059, 1652.063, 1652.075.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.10.4-3
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [224s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running D:/temp/RtmpG2phfJ/RLIBS_32d28547f44ab/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     The following object is masked from 'package:grDevices':
    
     windows
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: Unable to load perl libaries needed by read.xls()
     gdata: to support 'XLSX' (Excel 2007+) files.
    
     gdata: Run the function 'installXLSXsupport()'
     gdata: to automatically download and install the perl
     gdata: libaries needed to support Excel XLS and XLSX formats.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     2 errors out of 5751 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Wed Apr 25 23:39:20 2018. Search tests.Rraw for test numbers: 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [156s/192s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     7 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Fri Apr 27 19:31:09 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1, 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [264s/372s]
     Running ‘testthat.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/ripley/R/Lib32/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: Unable to load perl libaries needed by read.xls()
     gdata: to support 'XLSX' (Excel 2007+) files.
    
     gdata: Run the function 'installXLSXsupport()'
     gdata: to automatically download and install the perl
     gdata: libaries needed to support Excel XLS and XLSX formats.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Tests 1441-1444 not run. If required install the 'fr_FR.utf8' locale.
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     2 errors out of 5931 (lastID=1751, endian==little, sizeof(long double)==12, sizeof(pointer)==4) in inst/tests/tests.Rraw on Mon Apr 16 11:49:06 2018. Search tests.Rraw for test numbers: 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [157s/196s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     7 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Apr 28 07:30:35 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1, 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-release-linux-x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [191s/328s]
    Running the tests in ‘tests/main.R’ failed.
    Last 13 lines of output:
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     2 errors out of 5939 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Mon Apr 23 00:14:32 2018. Search tests.Rraw for test numbers: 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.10.4-3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘GenomicRanges’
Flavor: r-oldrel-osx-x86_64