CRAN Package Check Results for Package ifaTools

Last updated on 2018-04-29 01:46:53 CEST.

Check Details

Version: 0.14
Check: tests
Result: ERROR
     Running ‘testthat.R’ [382s/366s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > # NOTE: This will not test an uninstalled package.
     > library(testthat)
     > test_check('ifaTools')
     Loading required package: ifaTools
     Loading required package: shiny
     Loading required package: ggplot2
     Loading required package: reshape2
     Loading required package: rpf
     Loading required package: parallel
     Loading required package: OpenMx
     To take full advantage of multiple cores, use:
     mxOption(NULL, 'Number of Threads', parallel::detectCores()) #now
     Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
     [1] "/home/ripley/R/packages/tests32/ifaTools.Rcheck/tests/testthat"
     ── 1. Failure: addExploratoryFactors (@test-addExploratoryFactor.R#80) ────────
     m1$output$fit - m2$output$fit not equal to 115.39.
     1/1 mismatches
     [1] 212 - 115 == 96.3
    
    
     *** caught segfault ***
     address 0, cause 'memory not mapped'
    
     Traceback:
     1: runHelper(model, frontendStart, intervals, silent, suppressWarnings, unsafe, checkpoint, useSocket, onlyFrontend, useOptimizer)
     2: mxRun(mxModel(m1, mxComputeSequence(list(mxComputeNumericDeriv(checkGradient = FALSE), mxComputeReportDeriv()))), silent = TRUE)
     3: checkAnalyticDeriv(mxModel(univariatePrior("beta", "x", logit(1/4)), mxMatrix(nrow = 1, ncol = 1, labels = "x", free = TRUE, name = "par", values = logit(0.3))))
     4: eval(code, test_env)
     5: eval(code, test_env)
     6: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
     7: doTryCatch(return(expr), name, parentenv, handler)
     8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     9: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     10: doTryCatch(return(expr), name, parentenv, handler)
     11: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
     12: tryCatchList(expr, classes, parentenv, handlers)
     13: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
     14: test_code(desc, code, env = parent.frame())
     15: test_that("univariatePrior", { checkAnalyticDeriv(mxModel(univariatePrior("lnorm", "x", 1.1), mxMatrix(nrow = 1, ncol = 1, labels = "x", free = TRUE, name = "par", values = 0.3))) checkAnalyticDeriv(mxModel(univariatePrior("beta", "x", logit(1/4)), mxMatrix(nrow = 1, ncol = 1, labels = "x", free = TRUE, name = "par", values = logit(0.3)))) checkAnalyticDeriv(mxModel(univariatePrior("logit-norm", "x", logit(1/4)), mxMatrix(nrow = 1, ncol = 1, labels = "x", free = TRUE, name = "par", values = logit(0.3))))})
     16: eval(code, test_env)
     17: eval(code, test_env)
     18: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
     19: doTryCatch(return(expr), name, parentenv, handler)
     20: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     21: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     22: doTryCatch(return(expr), name, parentenv, handler)
     23: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
     24: tryCatchList(expr, classes, parentenv, handlers)
     25: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
     26: test_code(NULL, exprs, env)
     27: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
     28: force(code)
     29: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, { lister$start_file(basename(path)) source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap) end_context() })
     30: FUN(X[[i]], ...)
     31: lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
     32: force(code)
     33: with_reporter(reporter = current_reporter, results <- lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap))
     34: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
     35: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
     36: test_package_dir(package = package, test_path = test_path, filter = filter, reporter = reporter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
     37: test_check("ifaTools")
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Version: 0.14
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 1345-1400 (pritikin-schmidt.Rnw)
    Error: processing vignette 'pritikin-schmidt.Rnw' failed with diagnostics:
    Fit not achieved
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.14
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning: running command 'kpsewhich framed.sty' had status 1
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'pritikin-schmidt.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `titlesec.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.99 \usepackage
     {titletoc}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64