| NEWS | R Documentation |
(version 1.0 does not exist yet)
feature requests can be defined and watched here: https://github.com/courtiol/IsoriX_project/issues
this is a minor update necessary to maintain compatibility with spaMM 2.4
the syntax for the extraction of correlation terms of spaMM objects has changed
the calibration step is now optional, allowing for users to use an isoscape directly fitted on tissues instead of precipitation water
the function queryGNIP has been renamed and is now called prepdata, this function can also handle other datasets than GNIP
the function relevate has been modified to make crop possible around the pacific meridian -180/180 (but several issues remain to handle extra plot layers automatically)
an additional options as been added to prevent prompting during examples
new internal function .converts_months_to_numbers
the maximum duration of running time for examples can now be controlled using IsoriX.options(example_maxtime = XX)
due to new GNIP policies, we no longer provide the GNIP dataset for the entire World, but only a subset containing data for Germany (users should thus compile their precipitatin data themselves from the 'wiser' plateform provided by GNIP; see vignette Workflow)
it is now possible to control the colours and labels for the levels of isotopes or p-values in plots
for plotting, it is no longer needed to load the ocean mask and country borders (it now happens automatically)
the function relevate now allows for a cropping larger than the extent of the weather stations by means of the argument margin_pct
it is now possible to create the so-called annual averaged precipitation isoscapes!
queryGNIP can now split the dataset per month or year at each location during the aggregation
new function prepcipitate to prepare the precipitation brick
new function getprecip to download monthly precipitation rasters from WorldClim
new function isomultifit fitting isoscapes per strata (month, year, or any "split")
new function isomultiscape building isoscapes averaged across strata
new function create_aliens simulating of organism data
the inputs for filtering data by month or year using queryGNIP have changed
the default fixed effect structure for the mean model is isofit has changed
the namespace is now generated with Roxygen2
the datasets are now 'lazy-loaded'
new vignette for coding conventions
changed some object names following our coding convention (more to come)
the package could not be detached and reloaded
the citation was not correct
the path in getelev was breaking in some cases
the title of the assignment plot was missing when a single individual was plotted
new vignette explaining how to export spatial objects to GIS
the file GNIPdata has been updated and now contain 2014 data
names of all functions and objects have been refactored to remove upper cases
links to our GitHub directory have been added
new function downloadfile to download non standard elevation raster or any other file
function getelev can perform MD5 sum checks if the package 'tools' is installed
function getelev can display additional information during download if verbose > 1
the column animalID in the assignment dataset can now handle names with spaces
added Codecov to track test coverage for the package
the modification of the option set_ll_warn from the 'sp' package has been moved to onLoad (instead of onAttached) and the original state is now restored while unloading 'IsoriX'
the Earth distance method has been moved to the package 'spaMM'
function getelev lost its 'address' argument as downloadfile should now be used to download non-standard elevation rasters
some typo fixed in documentation files
RandomFields moved to suggest
.Rd files for documentation are now generated with Roxygen2
queryGNIP is now provided with a single month argument specifying the months to select
this was the first version of IsoriX submitted to CRAN