The PSTR package implements the Panel Smooth Transition Regression (PSTR) modelling.
The modelling procedure consists of three stages: Specification, Estimation and Evaluation. The package offers tools helping the users to conduct model specification tests, to do PSTR model estimation, and to do model evaluation.
The cluster-dependency and heteroskedasticity-consistent tests are implemented in the package.
The wild bootstrap and cluster wild bootstrap tests are also implemented.
Parallel computation (as an option) is implemented in some functions, especially the bootstrap tests. Therefore, the package suits tasks running many cores on super-computation servers.
You can either install the stable version from CRAN
install.packages("PSTR")or install the development version from GitHub
devtools::install_github("yukai-yang/PSTR")provided that the package “devtools” has been installed beforehand.
After installing the package, you need to load (attach better say) it by running the code
library(PSTR)You can first check the information and the current version number by running
version()
#> #########################################################################
#> ## package name: PSTR
#> ## author: Yukai Yang
#> ## Department of Statistics
#> ## Uppsala University
#> ## yukai.yang@statistik.uu.se
#> ## Version 1.1.0 Sep. 2017
#> #########################################################################Then you can take a look at all the available functions and data in the package
ls( grep("PSTR", search()) )
#> [1] "EstPSTR" "EvalTest" "Hansen99"
#> [4] "LinTest" "NewPSTR" "plot_transition"
#> [7] "version" "WCB_HETest" "WCB_LinTest"
#> [10] "WCB_TVTest"In the package, a data set called “Hansen99” is offered to give prompt example. For details of the data set, you can run
?Hansen99 You can create a new object of the class PSTR by doing
pstr = NewPSTR(Hansen99, dep='inva', indep=4:20, indep_k=c('vala','debta','cfa','sales'),
tvars=c('vala'), im=1, iT=14)
print(pstr)
#> #########################################################################
#> ## package name: PSTR
#> ## Version 1.1.0 Sep. 2017
#> #########################################################################
#> ***********************************************************************
#> Summary of the model:
#> -----------------------------------------------------------------------
#> time horizon sample size = 14, number of individuals = 560
#> -----------------------------------------------------------------------
#> Dependent variable: inva
#> -----------------------------------------------------------------------
#> Explanatory variables in the linear part:
#> dt_75 dt_76 dt_77 dt_78 dt_79 dt_80 dt_81 dt_82 dt_83 dt_84 dt_85 dt_86 dt_87 vala debta cfa sales
#> -----------------------------------------------------------------------
#> Explanatory variables in the non-linear part:
#> vala debta cfa sales
#> -----------------------------------------------------------------------
#> Potential transition variable(s) to be tested:
#> vala
#> #########################################################################
#> ***********************************************************************
#> Results of the linearity (homogeneity) tests:
#> ***********************************************************************
#> Sequence of homogeneity tests for selecting number of switches 'm':
#> #########################################################################
#> ***********************************************************************
#> Results of the PSTR estimation:
#> #########################################################################
#> ***********************************************************************
#> Results of the evaluation tests:
#> ***********************************************************************
#> #########################################################################It says that the data set “Hansen99” is used, the dependent variable is “inva”, the variables in the data from column 4 to 20 are the explanatory variables in the linear part (though you can write down the names of them), the explanatory variables in the nonlinear part are the four ones in “indep_k”, and the potential transition variable is “vala” (Tobin’s Q).
Now you can see that the “NewPSTR” is basically defining the settings of the model.
Note that you can print the object of the class PSTR. By default, it gives you a summary of the PSTR model. They are mainly about which one is the dependent variable, which ones are explanatory variables and etc..
The following code does linearity tests
pstr = LinTest(use=pstr)
print(pstr, "tests")
#> #########################################################################
#> ## package name: PSTR
#> ## Version 1.1.0 Sep. 2017
#> #########################################################################
#> ***********************************************************************
#> Results of the linearity (homogeneity) tests:
#> -----------------------------------------------------------------------
#> LM tests based on transition variable 'vala'
#> m LM_X PV LM_F PV HAC_X PV HAC_F PV
#> 1 125.3 0 28.99 0 30.03 4.819e-06 6.952 1.396e-05
#> ***********************************************************************
#> Sequence of homogeneity tests for selecting number of switches 'm':
#> -----------------------------------------------------------------------
#> LM tests based on transition variable 'vala'
#> m LM_X PV LM_F PV HAC_X PV HAC_F PV
#> 1 125.3 0 28.99 0 30.03 4.819e-06 6.952 1.396e-05
#> ***********************************************************************
#> #########################################################################You can see that the function “LinTest” takes the PSTR object “pstr” and overwrites it when return. This is the way I recommend as the functions handling the PSTR object in the package update the object by adding new atrributes or members. However, the same function will change the values of the attributes it adds. You can of course create new PSTR objects to take the return values in order to save the results from different settings of the model.
You can do the wild bootstrap and wild cluster bootstrap by running the following code. (Warning! Don’t run it except that you have at least 50 cores!)
iB = 5000 # the number of repetitions in the bootstrap
library(snowfall)
pstr = WCB_LinTest(use=pstr,iB=iB,parallel=T,cpus=50)It takes a long long time to run the bootstrap. This function is developed for those who work on some super-computation server with many cores and a large memory. Note that you will have to attach the “snowfall” package manually.
But of course, you can try the function on your personal computer by reducing the number of repetitions and the cores.
pstr = WCB_LinTest(use=pstr,iB=4,parallel=T,cpus=2)When you determine which transition variable to use for the estimation, in this case “inva”, you can estimate the PSTR model
pstr = EstPSTR(use=pstr,im=1,iq=1,useDelta=T,par=c(1.6,.5), vLower=4, vUpper=4)
print(pstr,"estimates")By default, the “optim” method “L-BFGS-B” is used, but you can change the method for estimation by doing
pstr = EstPSTR(use=pstr,im=1,iq=1,useDelta=T,par=c(1.6,.5), method="CG")
print(pstr,"estimates")
#> #########################################################################
#> ## package name: PSTR
#> ## Version 1.1.0 Sep. 2017
#> #########################################################################
#> ***********************************************************************
#> Results of the PSTR estimation:
#> -----------------------------------------------------------------------
#> Transition variable 'vala' is used in the estimation.
#> -----------------------------------------------------------------------
#> Parameter estimates in the linear part (first extreme regime) are
#> dt_75_0 dt_76_0 dt_77_0 dt_78_0 dt_79_0 dt_80_0 dt_81_0
#> Est -0.004332 -0.007436 -0.005040 0.001092 0.003012 0.006406 0.001119
#> s.e. 0.002502 0.002586 0.002738 0.002799 0.002697 0.002862 0.002944
#> dt_82_0 dt_83_0 dt_84_0 dt_85_0 dt_86_0 dt_87_0 vala_0
#> Est -0.007943 -0.014010 0.000836 0.004903 0.000628 -0.006537 -0.01722
#> s.e. 0.002677 0.002757 0.003085 0.003234 0.003104 0.003192 0.06771
#> debta_0 cfa_0 sales_0
#> Est -0.06389 0.08598 -0.000464
#> s.e. 0.02035 0.03117 0.004060
#> -----------------------------------------------------------------------
#> Parameter estimates in the non-linear part are
#> vala_1 debta_1 cfa_1 sales_1
#> Est 0.02403 0.06768 -0.04671 0.01033
#> s.e. 0.06772 0.02021 0.03373 0.00494
#> -----------------------------------------------------------------------
#> Parameter estimates in the second extreme regime are
#> vala_{0+1} debta_{0+1} cfa_{0+1} sales_{0+1}
#> Est 0.006810 0.003784 0.03927 0.009865
#> s.e. 0.001193 0.011720 0.01235 0.003116
#> -----------------------------------------------------------------------
#> Non-linear parameter estimates are
#> gamma c_1
#> Est 4.953 0.4949
#> s.e. 1.211 0.2538
#> -----------------------------------------------------------------------
#> Estimated standard deviation of the residuals is 0.04323
#> ***********************************************************************
#> #########################################################################The argument “useDelta” determines the type of the initial value for the smoothness parameter. By default “useDelta = F” means that the first initial value in “par” is the “gamma” instead of “delta”. Here we use the settings “useDelta = T” and “par = c(1.6, .5)” means that the first value of “par” is the “delta” and its value is 1.6. Note that “delta” and “gamma” has the relationship “gamma = exp(delta)”. Thus, the following two sentences are equivalent
pstr = EstPSTR(use=pstr,im=1,iq=1,useDelta=T,par=c(1.6,.5), method="CG")
pstr = EstPSTR(use=pstr,im=1,iq=1,par=c(exp(1.6),.5), method="CG")For details, read the vignette.
Now you can plot the estimated transition function by running
plot_transition(pstr, logx=TRUE, color = "blue", size = 2,
x="Tobin's Q in log scale", title="The Estimated Transition Function",
caption="If you wanna write something in the caption, do it here.")Note that the estimation of a linear panel regression model is also implemented. The user can do it by simply running
pstr0 = EstPSTR(use=pstr)
print(pstr0,"estimates")
#> #########################################################################
#> ## package name: PSTR
#> ## Version 1.1.0 Sep. 2017
#> #########################################################################
#> ***********************************************************************
#> Results of the PSTR estimation:
#> -----------------------------------------------------------------------
#> A linear panel regression with fixed effects is estimated.
#> -----------------------------------------------------------------------
#> Parameter estimates are
#> dt_75 dt_76 dt_77 dt_78 dt_79 dt_80 dt_81
#> Est -0.007759 -0.008248 -0.004296 0.002356 0.004370 0.008246 0.004164
#> s.e. 0.002306 0.002544 0.002718 0.002820 0.002753 0.002959 0.002992
#> dt_82 dt_83 dt_84 dt_85 dt_86 dt_87 vala
#> Est -0.005294 -0.010040 0.006864 0.009740 0.007027 0.0004091 0.008334
#> s.e. 0.002664 0.002678 0.003092 0.003207 0.003069 0.0030080 0.001259
#> debta cfa sales
#> Est -0.016380 0.06506 0.007957
#> s.e. 0.005725 0.01079 0.002412
#> -----------------------------------------------------------------------
#> Estimated standard deviation of the residuals is 0.04375
#> ***********************************************************************
#> #########################################################################The evaluation tests can be done based on the estimated model
## evaluatio tests
pstr1 = EvalTest(use=pstr,vq=pstr$mQ[,1])Note that in the “EvalTest”, only one transition variable is taken each time for the no remaining nonlinearity test. This is different from the “LinTest” function which can take several transition variables. This is the reason why I save the results into new PSTR objects “pstr1” instead of overwriting. By doing so, I can save more test results from different transition variables in new objects.
The user can also do the wild bootstrap and wild cluster bootstrap in the following way, provided that he or she has the super-computation resources.
iB = 5000
cpus = 50
## wild bootstrap time-varyint evaluation test
pstr = WCB_TVTest(use=pstr,iB=iB,parallel=T,cpus=cpus)
## wild bootstrap heterogeneity evaluation test
pstr1 = WCB_HETest(use=pstr1,vq=pstr$mQ[,1],iB=iB,parallel=T,cpus=cpus)Note that the evaluation functions do not accept the returned object “pstr0” from a linear panel regression model, as the evaluation tests are designed for the estimated PSTR model but not a linear one.