cytometree: Automated Cytometry Gating and Annotation

Given the hypothesis of a bimodal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bimodal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families.

Version: 1.1.1
Depends: R (≥ 3.1.0), Rcpp (≥ 0.12.11)
Imports: ggplot2, graphics, igraph, mclust, stats
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, viridis
Published: 2017-10-22
Author: Chariff Alkhassim, Boris Hejblum
Maintainer: Alkhassim Chariff <chariff.alkhassim at>
License: LGPL-3 | file LICENSE
NeedsCompilation: yes
Citation: cytometree citation info
Materials: README NEWS
CRAN checks: cytometree results


Reference manual: cytometree.pdf
Vignettes: Userguide for performing automatic gating with 'cytometree'
Package source: cytometree_1.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: cytometree_1.1.1.tgz, r-oldrel: cytometree_1.1.1.tgz
Old sources: cytometree archive


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