Using repositories other than CRAN with miniCRAN

Andrie de Vries

January 15, 2018

Although the package name miniCRAN seems to indicate you can only use CRAN as a repository, you can in fact use any CRAN-like repository.

This vignette contains some examples of how to refer to different package repositories, including CRAN, alternative mirrors of CRAN, R-Forge as well as BioConductor.

To simplify the code to show the salient features, we use a little helper function, index() that is a simple wrapper around available.packages():

# Wrapper around available.packages ---------------------------------------
 
index <- function(url, type = "source", filters = NULL, head = 5, cols = c("Package", "Version")) {
  contribUrl <- contrib.url(url, type = type)
  p <- available.packages(contribUrl, type = type, filters = filters)
  p[1:head, cols]
}

Using CRAN

The URL for the master mirror in Austria:

CRAN <- "http://cran.r-project.org"
index(CRAN)

Using a different mirror

You can also point to any other mirror, for example the stable version hosted by Revolution Analytics:

revoStable <- "http://packages.revolutionanalytics.com/cran/3.1/stable"
index(revoStable)
 
revoMirror <- "http://cran.revolutionanalytics.com"
index(revoMirror)

Using R-forge

R-forge has CRAN-like structure:

rforge <- "http://r-forge.r-project.org"
index(rforge)

Using BioConductor

Although BioConductor has a different preferred install mechanism, the underlying repository structure is also CRAN-like:

bioc <- local({
  env <- new.env()
  on.exit(rm(env))
  evalq(source("http://bioconductor.org/biocLite.R", local = TRUE), env)
  biocinstallRepos()
})
 
bioc
bioc[grep("BioC", names(bioc))]
 
 
index(bioc["BioCsoft"])