Last updated on 2018-05-14 01:46:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2 | 6.88 | 24.85 | 31.73 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.2 | 5.85 | 19.85 | 25.70 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.2 | 68.17 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2 | 66.75 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.2 | 13.00 | 84.00 | 97.00 | NOTE | |
| r-patched-linux-x86_64 | 1.2 | 4.71 | 23.69 | 28.40 | WARN | |
| r-patched-solaris-x86 | 1.2 | 91.70 | NOTE | |||
| r-release-linux-x86_64 | 1.2 | 6.89 | 23.32 | 30.21 | WARN | |
| r-release-windows-ix86+x86_64 | 1.2 | 13.00 | 84.00 | 97.00 | NOTE | |
| r-release-osx-x86_64 | 1.2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2 | 7.00 | 59.00 | 66.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.2 | NOTE |
Version: 1.2
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.2
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
AIC.MSM.glm AIC.MSM.lm intervals.MSM.glm intervals.MSM.lm
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.2
Check: R code for possible problems
Result: NOTE
[,MSM.fitted-character-missing-missing: warning in switch(EXP = i,
CondMean = return(x@CondMean), error = return(x@error), Likel =
return(x@Likel), margLik = return(x@margLik), filtProb =
return(x@filtProb), smoProb = return(x@smoProb), states =
return(apply(x@smoProb, 1, which.max)), smoTransMat =
return(x@smoTransMat), logLikel = return(x@logLikel), stop("Error:",
i, "is not a MSM.fitted slot")): partial argument match of ‘EXP’ to
‘EXPR’
[,MSM.glm-character-missing-missing: warning in switch(EXP = i, call =
return(x@call), model = return(x@model), k = return(x@k), switch =
return(x@switch), Coef = return(x@Coef), seCoef = return(x@seCoef),
transMat = return(x@transMat), iniProb = return(x@iniProb), Fit =
return(x@Fit), states = return(x@Fit["states"]), family =
return(x@family), stop("Error:", i, "is not a MSM slot")): partial
argument match of ‘EXP’ to ‘EXPR’
[,MSM.lm-character-missing-missing: warning in switch(EXP = i, call =
return(x@call), model = return(x@model), k = return(x@k), switch =
return(x@switch), Coef = return(x@Coef), seCoef = return(x@seCoef),
std = return(x@std), transMat = return(x@transMat), iniProb =
return(x@iniProb), Fit = return(x@Fit), states =
return(x@Fit["states"]), stop("Error:", i, "is not a MSM slot")):
partial argument match of ‘EXP’ to ‘EXPR’
.MSM.em: no visible global function definition for ‘model.matrix’
.MSM.em : paralel : <anonymous>: no visible global function definition
for ‘runif’
.MSM.em : paralel: no visible global function definition for ‘runif’
.MSM.formula.msmFit: no visible global function definition for ‘lm’
.MSM.formula.msmFit: no visible global function definition for ‘glm’
.MSM.glm.maximEM: no visible global function definition for ‘glm’
.MSM.glm.maximEM: no visible global function definition for ‘coef’
.MSM.glm.msmFilter: no visible global function definition for
‘model.matrix’
.MSM.glm.msmFit: no visible global function definition for ‘update’
.MSM.glm.msmFit: no visible global function definition for ‘as.formula’
.MSM.glm.msmFit: no visible global function definition for ‘coef’
.MSM.glm.msmFit: no visible global function definition for ‘quantile’
.MSM.glm.msmFit : <anonymous>: no visible global function definition
for ‘dpois’
.MSM.glm.msmFit : <anonymous>: no visible global function definition
for ‘dbinom’
.MSM.glm.msmFit : <anonymous>: no visible global function definition
for ‘dnorm’
.MSM.glm.msmFit : <anonymous>: no visible global function definition
for ‘dgamma’
.MSM.glm.summary : <anonymous>: no visible global function definition
for ‘pnorm’
.MSM.glm.summary: no visible global function definition for
‘printCoefmat’
.MSM.larg.plotDiag : <anonymous>: no visible global function definition
for ‘ts.plot’
.MSM.larg.plotDiag : <anonymous>: no visible global function definition
for ‘sd’
.MSM.larg.plotDiag : <anonymous>: no visible global function definition
for ‘qqnorm’
.MSM.larg.plotDiag : <anonymous>: no visible global function definition
for ‘qqline’
.MSM.larg.plotDiag : <anonymous>: no visible global function definition
for ‘acf’
.MSM.larg.plotDiag : <anonymous>: no visible global function definition
for ‘pacf’
.MSM.larg.plotReg : <anonymous> : <anonymous>: no visible global
function definition for ‘ts’
.MSM.lm.hessian: no visible global function definition for ‘tail’
.MSM.lm.maximEM: no visible global function definition for ‘lm’
.MSM.lm.maximEM: no visible global function definition for ‘coef’
.MSM.lm.maximEM: no visible global function definition for ‘tail’
.MSM.lm.maximEM: no visible global function definition for ‘resid’
.MSM.lm.maximEM: no visible global function definition for
‘weighted.residuals’
.MSM.lm.msmFilter: no visible global function definition for
‘model.matrix’
.MSM.lm.msmFilter: no visible global function definition for ‘dnorm’
.MSM.lm.msmFit: no visible global function definition for ‘update’
.MSM.lm.msmFit: no visible global function definition for ‘as.formula’
.MSM.lm.msmFit: no visible global function definition for ‘coef’
.MSM.lm.summary : <anonymous>: no visible global function definition
for ‘pnorm’
.MSM.lm.summary: no visible global function definition for
‘printCoefmat’
.MSM.lm.summary: no visible global function definition for ‘quantile’
.MSM.plot: no visible global function definition for ‘ts.plot’
.MSM.plotProb : <anonymous>: no visible global function definition for
‘ts’
.MSM.sma.plotReg : <anonymous> : <anonymous>: no visible global
function definition for ‘ts’
fopt.lm: no visible global function definition for ‘tail’
intervals.MSM.glm: no visible global function definition for ‘qnorm’
intervals.MSM.lm: no visible global function definition for ‘qnorm’
em,MSM.linear-list: no visible global function definition for
‘model.matrix’
em,MSM.linear-list : paralel : <anonymous>: no visible global function
definition for ‘runif’
em,MSM.linear-list : paralel: no visible global function definition for
‘runif’
hessian,MSM.lm: no visible global function definition for ‘tail’
maximEM,MSM.glm-data.frame: no visible global function definition for
‘glm’
maximEM,MSM.glm-data.frame: no visible global function definition for
‘coef’
maximEM,MSM.lm-data.frame: no visible global function definition for
‘lm’
maximEM,MSM.lm-data.frame: no visible global function definition for
‘coef’
maximEM,MSM.lm-data.frame: no visible global function definition for
‘tail’
maximEM,MSM.lm-data.frame: no visible global function definition for
‘resid’
maximEM,MSM.lm-data.frame: no visible global function definition for
‘weighted.residuals’
msmFilter,MSM.glm: no visible global function definition for
‘model.matrix’
msmFilter,MSM.lm: no visible global function definition for
‘model.matrix’
msmFilter,MSM.lm: no visible global function definition for ‘dnorm’
msmFit,formula-numeric-logical-ANY-data.frame-ANY: no visible global
function definition for ‘lm’
msmFit,formula-numeric-logical-ANY-data.frame-ANY: no visible global
function definition for ‘glm’
msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
definition for ‘update’
msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
definition for ‘as.formula’
msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
definition for ‘coef’
msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
definition for ‘quantile’
msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
global function definition for ‘dpois’
msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
global function definition for ‘dbinom’
msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
global function definition for ‘dnorm’
msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
global function definition for ‘dgamma’
msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
function definition for ‘update’
msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
function definition for ‘as.formula’
msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
function definition for ‘coef’
plot,MSM.linear-missing: no visible global function definition for
‘ts.plot’
plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
definition for ‘ts.plot’
plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
definition for ‘sd’
plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
definition for ‘qqnorm’
plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
definition for ‘qqline’
plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
definition for ‘acf’
plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
definition for ‘pacf’
plotDiag,MSM.linear-missing: no visible global function definition for
‘ts.plot’
plotDiag,MSM.linear-missing: no visible global function definition for
‘sd’
plotDiag,MSM.linear-missing: no visible global function definition for
‘qqnorm’
plotDiag,MSM.linear-missing: no visible global function definition for
‘qqline’
plotDiag,MSM.linear-missing: no visible global function definition for
‘acf’
plotDiag,MSM.linear-missing: no visible global function definition for
‘pacf’
plotProb,MSM.linear : <anonymous>: no visible global function
definition for ‘ts’
plotReg,MSM.linear-character : <anonymous> : <anonymous>: no visible
global function definition for ‘ts’
plotReg,MSM.linear-missing : <anonymous> : <anonymous>: no visible
global function definition for ‘ts’
summary,MSM.glm : <anonymous>: no visible global function definition
for ‘pnorm’
summary,MSM.glm: no visible global function definition for
‘printCoefmat’
summary,MSM.lm : <anonymous>: no visible global function definition for
‘pnorm’
summary,MSM.lm: no visible global function definition for
‘printCoefmat’
summary,MSM.lm: no visible global function definition for ‘quantile’
Undefined global functions or variables:
acf as.formula coef dbinom dgamma dnorm dpois glm lm model.matrix
pacf pnorm printCoefmat qnorm qqline qqnorm quantile resid runif sd
tail ts ts.plot update weighted.residuals
Consider adding
importFrom("stats", "acf", "as.formula", "coef", "dbinom", "dgamma",
"dnorm", "dpois", "glm", "lm", "model.matrix", "pacf",
"pnorm", "printCoefmat", "qnorm", "qqline", "qqnorm",
"quantile", "resid", "runif", "sd", "ts", "ts.plot",
"update", "weighted.residuals")
importFrom("utils", "tail")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.2
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: nlme
Loading required package: parallel
Error: processing vignette ‘examples.rnw’ failed with diagnostics:
chunk 17
Error in UseMethod("intervals") :
no applicable method for ‘intervals’ applied to an object of class "c('MSM.glm', 'MSM.linear', 'MSM')"
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64