CRAN Package Check Results for Package bpca

Last updated on 2018-05-14 01:46:25 CEST.

Check Details

Version: 1.2-2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     bpca.default bpca.prcomp plot.bpca.2d plot.bpca.3d plot.qbpca
     print.latex.bpca summary.bpca summary.latex.bpca
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.2-2
Check: R code for possible problems
Result: NOTE
    bpca.default: no visible binding for global variable ‘sd’
    dt.tools: no visible binding for global variable ‘sd’
    plot.bpca.2d : draw.obj: no visible global function definition for
     ‘points’
    plot.bpca.2d : draw.obj: no visible global function definition for
     ‘text’
    plot.bpca.2d : draw.var: no visible global function definition for
     ‘points’
    plot.bpca.2d : draw.var: no visible global function definition for
     ‘text’
    plot.bpca.2d : draw.var.seg: no visible global function definition for
     ‘segments’
    plot.bpca.2d : draw.circles: no visible global function definition for
     ‘symbols’
    plot.bpca.2d: no visible global function definition for ‘plot’
    plot.bpca.2d: no visible global function definition for ‘abline’
    plot.bpca.2d: no visible global function definition for ‘identify’
    plot.bpca.2d: no visible global function definition for ‘arrows’
    plot.bpca.2d: no visible global function definition for ‘points’
    plot.bpca.2d: no visible global function definition for ‘text’
    plot.bpca.2d: no visible global function definition for ‘segments’
    plot.bpca.2d: no visible global function definition for ‘symbols’
    plot.bpca.2d: no visible global function definition for ‘chull’
    plot.bpca.2d: no visible global function definition for ‘polygon’
    plot.bpca.3d: no visible global function definition for ‘par’
    plot.bpca.3d: no visible global function definition for ‘text’
    plot.bpca.3d: no visible global function definition for ‘identify’
    plot.qbpca: no visible global function definition for ‘plot’
    plot.qbpca: no visible global function definition for ‘points’
    plot.qbpca: no visible global function definition for ‘legend’
    qbpca: no visible global function definition for ‘cor’
    var.rdf: no visible global function definition for ‘cor’
    Undefined global functions or variables:
     abline arrows chull cor identify legend par plot points polygon sd
     segments symbols text
    Consider adding
     importFrom("grDevices", "chull")
     importFrom("graphics", "abline", "arrows", "identify", "legend", "par",
     "plot", "points", "polygon", "segments", "symbols", "text")
     importFrom("stats", "cor", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2-2
Check: examples
Result: ERROR
    Running examples in ‘bpca-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: bpca-package
    > ### Title: Biplot of Multivariate Data Based on Principal Components
    > ### Analysis
    > ### Aliases: bpca-package
    > ### Keywords: package multivariate
    >
    > ### ** Examples
    >
    > ##
    > ## Grouping objects with different symbols and colors - 2d and 3d
    > ##
    >
    > dev.new(w=6, h=6)
    > oask <- devAskNewPage(dev.interactive(orNone=TRUE))
    >
    > ## Not run:
    > ##D # 2d
    > ##D plot(bpca(iris[-5]),
    > ##D var.factor=.3,
    > ##D var.cex=.7,
    > ##D obj.names=FALSE,
    > ##D obj.cex=1.5,
    > ##D obj.col=c('red', 'green3', 'blue')[unclass(iris$Species)],
    > ##D obj.pch=c('+', '*', '-')[unclass(iris$Species)])
    > ##D
    > ##D # 3d static
    > ##D plot(bpca(iris[-5],
    > ##D d=1:3),
    > ##D var.factor=.2,
    > ##D var.color=c('blue', 'red'),
    > ##D var.cex=1,
    > ##D obj.names=FALSE,
    > ##D obj.cex=1,
    > ##D obj.col=c('red', 'green3', 'blue')[unclass(iris$Species)],
    > ##D obj.pch=c('+', '*', '-')[unclass(iris$Species)])
    > ##D
    > ##D # 3d dinamic
    > ##D plot(bpca(iris[-5],
    > ##D method='hj',
    > ##D d=1:3),
    > ##D rgl.use=TRUE,
    > ##D var.col='brown',
    > ##D var.factor=.3,
    > ##D var.cex=1.2,
    > ##D obj.names=FALSE,
    > ##D obj.cex=.8,
    > ##D obj.col=c('red', 'green3', 'orange')[unclass(iris$Species)],
    > ##D simple.axes=FALSE,
    > ##D box=TRUE)
    > ## End(Not run)
    >
    > ##
    > ## New options ploting
    > ##
    > plot(bpca(ontario))
    Error in UseMethod("bpca", x) :
     no applicable method for 'bpca' applied to an object of class "data.frame"
    Calls: plot -> bpca
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2-2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: scatterplot3d
    Loading required package: rgl
    
    Error: processing vignette ‘latex_bpca.Rnw’ failed with diagnostics:
     chunk 1 (label = tab)
    Error in UseMethod("bpca", x) :
     no applicable method for ‘bpca’ applied to an object of class "data.frame"
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2-2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: scatterplot3d
    Loading required package: rgl
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'latex_bpca.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `multirow.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.24 \usepackage
     {colortbl}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64