The add_basic_meta() function takes as input an existing nexml object (like the other add_ functions, if none is provided it will create one), and at the time of this writing any of the following parameters: title, description, creator, pubdate, rights, publisher, citation. Other metadata elements and corresponding parameters may be added in the future.
Load the packages and data:
library('RNeXML')
data(bird.orders)Create an nexml object for the phylogeny bird.orders and add appropriate metadata:
birds <- add_trees(bird.orders)
birds <- add_basic_meta(
title = "Phylogeny of the Orders of Birds From Sibley and Ahlquist",
description = "This data set describes the phylogenetic relationships of the
orders of birds as reported by Sibley and Ahlquist (1990). Sibley
and Ahlquist inferred this phylogeny from an extensive number of
DNA/DNA hybridization experiments. The ``tapestry'' reported by
these two authors (more than 1000 species out of the ca. 9000
extant bird species) generated a lot of debates.
The present tree is based on the relationships among orders. The
branch lengths were calculated from the values of Delta T50H as
found in Sibley and Ahlquist (1990, fig. 353).",
citation = "Sibley, C. G. and Ahlquist, J. E. (1990) Phylogeny and
classification of birds: a study in molecular evolution. New
Haven: Yale University Press.",
creator = "Sibley, C. G. and Ahlquist, J. E.",
nexml=birds)Instead of a literal string, citations can also be provided in R’s bibentry type, which is the one in which R package citations are obtained:
birds <- add_basic_meta(citation = citation("ape"), nexml = birds)The taxize_nexml() function uses the R package taxize [@Chamberlain_2013] to check each taxon label against the NCBI database. If a unique match is found, a metadata annotation is added to the taxon providing the NCBI identification number to the taxonomic unit.
birds <- taxize_nexml(birds, "NCBI")If no match is found, the user is warned to check for possible typographic errors in the taxonomic labels provided. If multiple matches are found, the user will be prompted to choose between them.
We can get a list of namespaces along with their prefixes from the nexml object:
prefixes <- get_namespaces(birds)
prefixes["dc"] dc
"http://purl.org/dc/elements/1.1/" We create a meta element containing this annotation using the meta function:
modified <- meta(property = "prism:modificationDate", content = "2013-10-04")We can add this annotation to our existing birds NeXML file using the add_meta() function. Because we do not specify a level, it is added to the root node, referring to the NeXML file as a whole.
birds <- add_meta(modified, birds) The built-in vocabularies are just the tip of the iceberg of established vocabularies. Here we add an annotation from the skos namespace which describes the history of where the data comes from:
history <- meta(property = "skos:historyNote",
content = "Mapped from the bird.orders data in the ape package using RNeXML")Because skos is not in the current namespace list, we add it with a url when adding this meta element. We also specify that this annotation be placed at the level of the trees sub-node in the NeXML file.
birds <- add_meta(history,
birds,
level = "trees",
namespaces = c(skos = "http://www.w3.org/2004/02/skos/core#"))For finer control of the level at which a meta element is added, we will manipulate the nexml R object directly using S4 sub-setting, as shown in the supplement.
Much richer metadata annotation is possible. Later we illustrate how metadata annotation can be used to extend the base NeXML format to represent new forms of data while maintaining compatibility with any NeXML parser. The RNeXML package can be easily extended to support helper functions such as taxize_nexml to add additional metadata without imposing a large burden on the user.
A call to the nexml object prints some metadata summarizing the data structure:
birdsA nexml object representing:
1 phylogenetic tree blocks, where:
block 1 contains 1 phylogenetic trees
46 meta elements
0 character matrices
23 taxonomic units
Taxa: Struthioniformes, Tinamiformes, Craciformes, Galliformes, Anseriformes, Turniciformes ...
NeXML generated by RNeXML using schema version: 0.9
size: 397.6 Kb We can extract all metadata pertaining to the NeXML document as a whole (annotations of the XML root node, <nexml>) with the command
meta <- get_metadata(birds) This returns a data.frame of available metadata. We can see the kinds of metadata recorded from the names:
meta meta property datatype
1 m2 dc:title xsd:string
2 m3 dc:creator xsd:string
3 m4 dc:description xsd:string
4 m5 <NA> <NA>
5 m6 dcterms:bibliographicCitation xsd:string
6 m7 dc:creator xsd:string
7 m8 dc:pubdate xsd:string
8 m9 <NA> <NA>
9 m20 dcterms:bibliographicCitation xsd:string
10 m44 prism:modificationDate xsd:string
content
1 Phylogeny of the Orders of Birds From Sibley and Ahlquist
2 Sibley, C. G. and Ahlquist, J. E.
3 This data set describes the phylogenetic relationships of the\n orders of birds as reported by Sibley and Ahlquist (1990). Sibley\n and Ahlquist inferred this phylogeny from an extensive number of\n DNA/DNA hybridization experiments. The ``tapestry'' reported by\n these two authors (more than 1000 species out of the ca. 9000\n extant bird species) generated a lot of debates.\n\n The present tree is based on the relationships among orders. The\n branch lengths were calculated from the values of Delta T50H as\n found in Sibley and Ahlquist (1990, fig. 353).
4 <NA>
5 Sibley, C. G. and Ahlquist, J. E. (1990) Phylogeny and\n classification of birds: a study in molecular evolution. New\n Haven: Yale University Press.
6 rstudio
7 2018-05-06
8 <NA>
9 Paradis E, Claude J, Strimmer K (2004). "APE: analyses of\nphylogenetics and evolution in R language." _Bioinformatics_,\n*20*, 289-290.
10 2013-10-04
xsi.type rel
1 LiteralMeta <NA>
2 LiteralMeta <NA>
3 LiteralMeta <NA>
4 ResourceMeta cc:license
5 LiteralMeta <NA>
6 LiteralMeta <NA>
7 LiteralMeta <NA>
8 ResourceMeta cc:license
9 LiteralMeta <NA>
10 LiteralMeta <NA>
href
1 <NA>
2 <NA>
3 <NA>
4 http://creativecommons.org/publicdomain/zero/1.0/
5 <NA>
6 <NA>
7 <NA>
8 http://creativecommons.org/publicdomain/zero/1.0/
9 <NA>
10 <NA>We can also access a table of taxonomic metadata:
get_taxa(birds) otu label about xsi.type otus
1 ou1 Struthioniformes #ou1 NA os1
2 ou2 Tinamiformes #ou2 NA os1
3 ou3 Craciformes #ou3 NA os1
4 ou4 Galliformes #ou4 NA os1
5 ou5 Anseriformes #ou5 NA os1
6 ou6 Turniciformes #ou6 NA os1
7 ou7 Piciformes #ou7 NA os1
8 ou8 Galbuliformes #ou8 NA os1
9 ou9 Bucerotiformes #ou9 NA os1
10 ou10 Upupiformes #ou10 NA os1
11 ou11 Trogoniformes #ou11 NA os1
12 ou12 Coraciiformes #ou12 NA os1
13 ou13 Coliiformes #ou13 NA os1
14 ou14 Cuculiformes #ou14 NA os1
15 ou15 Psittaciformes #ou15 NA os1
16 ou16 Apodiformes #ou16 NA os1
17 ou17 Trochiliformes #ou17 NA os1
18 ou18 Musophagiformes #ou18 NA os1
19 ou19 Strigiformes #ou19 NA os1
20 ou20 Columbiformes #ou20 NA os1
21 ou21 Gruiformes #ou21 NA os1
22 ou22 Ciconiiformes #ou22 NA os1
23 ou23 Passeriformes #ou23 NA os1Which returns text from the otu element labels, typically used to define taxonomic names, rather than text from explicit meta elements.
We can also access metadata at a specific level (or use level=all to extract all meta elements in a list). Here we show only the first few results:
otu_meta <- get_metadata(birds, level="otus/otu")
otu_meta meta property datatype content xsi.type rel
1 m21 NA NA NA ResourceMeta tc:toTaxon
2 m22 NA NA NA ResourceMeta tc:toTaxon
3 m23 NA NA NA ResourceMeta tc:toTaxon
4 m24 NA NA NA ResourceMeta tc:toTaxon
5 m25 NA NA NA ResourceMeta tc:toTaxon
6 m26 NA NA NA ResourceMeta tc:toTaxon
7 m27 NA NA NA ResourceMeta tc:toTaxon
8 m28 NA NA NA ResourceMeta tc:toTaxon
9 m29 NA NA NA ResourceMeta tc:toTaxon
10 m30 NA NA NA ResourceMeta tc:toTaxon
11 m31 NA NA NA ResourceMeta tc:toTaxon
12 m32 NA NA NA ResourceMeta tc:toTaxon
13 m33 NA NA NA ResourceMeta tc:toTaxon
14 m34 NA NA NA ResourceMeta tc:toTaxon
15 m35 NA NA NA ResourceMeta tc:toTaxon
16 m36 NA NA NA ResourceMeta tc:toTaxon
17 m37 NA NA NA ResourceMeta tc:toTaxon
18 m38 NA NA NA ResourceMeta tc:toTaxon
19 m39 NA NA NA ResourceMeta tc:toTaxon
20 m40 NA NA NA ResourceMeta tc:toTaxon
21 m41 NA NA NA ResourceMeta tc:toTaxon
22 m42 NA NA NA ResourceMeta tc:toTaxon
23 m43 NA NA NA ResourceMeta tc:toTaxon
href otu otus
1 http://ncbi.nlm.nih.gov/taxonomy/8798 ou1 os1
2 http://ncbi.nlm.nih.gov/taxonomy/8802 ou2 os1
3 http://ncbi.nlm.nih.gov/taxonomy/8976 ou3 os1
4 http://ncbi.nlm.nih.gov/taxonomy/8976 ou4 os1
5 http://ncbi.nlm.nih.gov/taxonomy/8826 ou5 os1
6 http://ncbi.nlm.nih.gov/taxonomy/9245 ou6 os1
7 http://ncbi.nlm.nih.gov/taxonomy/9219 ou7 os1
8 http://ncbi.nlm.nih.gov/taxonomy/118184 ou8 os1
9 http://ncbi.nlm.nih.gov/taxonomy/57379 ou9 os1
10 http://ncbi.nlm.nih.gov/taxonomy/57389 ou10 os1
11 http://ncbi.nlm.nih.gov/taxonomy/56308 ou11 os1
12 http://ncbi.nlm.nih.gov/taxonomy/8936 ou12 os1
13 http://ncbi.nlm.nih.gov/taxonomy/57384 ou13 os1
14 http://ncbi.nlm.nih.gov/taxonomy/8940 ou14 os1
15 http://ncbi.nlm.nih.gov/taxonomy/9223 ou15 os1
16 http://ncbi.nlm.nih.gov/taxonomy/8892 ou16 os1
17 http://ncbi.nlm.nih.gov/taxonomy/8892 ou17 os1
18 http://ncbi.nlm.nih.gov/taxonomy/56301 ou18 os1
19 http://ncbi.nlm.nih.gov/taxonomy/30458 ou19 os1
20 http://ncbi.nlm.nih.gov/taxonomy/8929 ou20 os1
21 http://ncbi.nlm.nih.gov/taxonomy/9108 ou21 os1
22 http://ncbi.nlm.nih.gov/taxonomy/8920 ou22 os1
23 http://ncbi.nlm.nih.gov/taxonomy/9126 ou23 os1We often want to combine metadata from multiple tables. For instance, in this exercise we want to include the taxonomic identifier and id value for each species returned in the character table. This helps us more precisely identify the species whose traits are described by the table.
library("RNeXML")
library("dplyr")
library("geiger")
knitr::opts_chunk$set(message = FALSE, warning=FALSE, comment = NA)To begin, let’s generate a NeXML file using the tree and trait data from the geiger package’s “primates” data:
data("primates")
add_trees(primates$phy) %>%
add_characters(primates$dat, ., append=TRUE) %>%
taxize_nexml() -> nex (Note that we’ve used dplyr’s cute pipe syntax, but unfortunately our add_ methods take the nexml object as the second argument instead of the first, so this isn’t as elegant since we need the stupid . to show where the piped output should go…)
We now read in the three tables of interest. Note that we tell get_characters to give us species labels as there own column, rather than as rownames. The latter is the default only because this plays more nicely with the default format for character matrices that is expected by geiger and other phylogenetics packages, but is in general a silly choice for data manipulation.
otu_meta <- get_metadata(nex, "otus/otu")
taxa <- get_taxa(nex)
char <- get_characters(nex, rownames_as_col = TRUE)We can take a peek at what the tables look like, just to orient ourselves:
otu_meta meta property datatype content xsi.type rel
1 m49 NA NA NA ResourceMeta tc:toTaxon
2 m50 NA NA NA ResourceMeta tc:toTaxon
3 m51 NA NA NA ResourceMeta tc:toTaxon
4 m52 NA NA NA ResourceMeta tc:toTaxon
5 m53 NA NA NA ResourceMeta tc:toTaxon
6 m54 NA NA NA ResourceMeta tc:toTaxon
7 m55 NA NA NA ResourceMeta tc:toTaxon
8 m56 NA NA NA ResourceMeta tc:toTaxon
9 m57 NA NA NA ResourceMeta tc:toTaxon
10 m58 NA NA NA ResourceMeta tc:toTaxon
11 m59 NA NA NA ResourceMeta tc:toTaxon
12 m60 NA NA NA ResourceMeta tc:toTaxon
13 m61 NA NA NA ResourceMeta tc:toTaxon
14 m62 NA NA NA ResourceMeta tc:toTaxon
15 m63 NA NA NA ResourceMeta tc:toTaxon
16 m64 NA NA NA ResourceMeta tc:toTaxon
17 m65 NA NA NA ResourceMeta tc:toTaxon
18 m66 NA NA NA ResourceMeta tc:toTaxon
19 m67 NA NA NA ResourceMeta tc:toTaxon
20 m68 NA NA NA ResourceMeta tc:toTaxon
21 m69 NA NA NA ResourceMeta tc:toTaxon
22 m70 NA NA NA ResourceMeta tc:toTaxon
23 m71 NA NA NA ResourceMeta tc:toTaxon
24 m72 NA NA NA ResourceMeta tc:toTaxon
25 m73 NA NA NA ResourceMeta tc:toTaxon
26 m74 NA NA NA ResourceMeta tc:toTaxon
27 m75 NA NA NA ResourceMeta tc:toTaxon
28 m76 NA NA NA ResourceMeta tc:toTaxon
29 m77 NA NA NA ResourceMeta tc:toTaxon
30 m78 NA NA NA ResourceMeta tc:toTaxon
31 m79 NA NA NA ResourceMeta tc:toTaxon
32 m80 NA NA NA ResourceMeta tc:toTaxon
33 m81 NA NA NA ResourceMeta tc:toTaxon
34 m82 NA NA NA ResourceMeta tc:toTaxon
35 m83 NA NA NA ResourceMeta tc:toTaxon
36 m84 NA NA NA ResourceMeta tc:toTaxon
37 m85 NA NA NA ResourceMeta tc:toTaxon
38 m86 NA NA NA ResourceMeta tc:toTaxon
39 m87 NA NA NA ResourceMeta tc:toTaxon
40 m88 NA NA NA ResourceMeta tc:toTaxon
41 m89 NA NA NA ResourceMeta tc:toTaxon
42 m90 NA NA NA ResourceMeta tc:toTaxon
43 m91 NA NA NA ResourceMeta tc:toTaxon
44 m92 NA NA NA ResourceMeta tc:toTaxon
45 m93 NA NA NA ResourceMeta tc:toTaxon
46 m94 NA NA NA ResourceMeta tc:toTaxon
47 m95 NA NA NA ResourceMeta tc:toTaxon
48 m96 NA NA NA ResourceMeta tc:toTaxon
49 m97 NA NA NA ResourceMeta tc:toTaxon
50 m98 NA NA NA ResourceMeta tc:toTaxon
51 m99 NA NA NA ResourceMeta tc:toTaxon
52 m100 NA NA NA ResourceMeta tc:toTaxon
53 m101 NA NA NA ResourceMeta tc:toTaxon
54 m102 NA NA NA ResourceMeta tc:toTaxon
55 m103 NA NA NA ResourceMeta tc:toTaxon
56 m104 NA NA NA ResourceMeta tc:toTaxon
57 m105 NA NA NA ResourceMeta tc:toTaxon
58 m106 NA NA NA ResourceMeta tc:toTaxon
59 m107 NA NA NA ResourceMeta tc:toTaxon
60 m108 NA NA NA ResourceMeta tc:toTaxon
61 m109 NA NA NA ResourceMeta tc:toTaxon
62 m110 NA NA NA ResourceMeta tc:toTaxon
63 m111 NA NA NA ResourceMeta tc:toTaxon
64 m112 NA NA NA ResourceMeta tc:toTaxon
65 m113 NA NA NA ResourceMeta tc:toTaxon
66 m114 NA NA NA ResourceMeta tc:toTaxon
67 m115 NA NA NA ResourceMeta tc:toTaxon
68 m116 NA NA NA ResourceMeta tc:toTaxon
69 m117 NA NA NA ResourceMeta tc:toTaxon
70 m118 NA NA NA ResourceMeta tc:toTaxon
71 m119 NA NA NA ResourceMeta tc:toTaxon
72 m120 NA NA NA ResourceMeta tc:toTaxon
73 m121 NA NA NA ResourceMeta tc:toTaxon
74 m122 NA NA NA ResourceMeta tc:toTaxon
75 m123 NA NA NA ResourceMeta tc:toTaxon
76 m124 NA NA NA ResourceMeta tc:toTaxon
77 m125 NA NA NA ResourceMeta tc:toTaxon
78 m126 NA NA NA ResourceMeta tc:toTaxon
79 m127 NA NA NA ResourceMeta tc:toTaxon
80 m128 NA NA NA ResourceMeta tc:toTaxon
81 m129 NA NA NA ResourceMeta tc:toTaxon
82 m130 NA NA NA ResourceMeta tc:toTaxon
83 m131 NA NA NA ResourceMeta tc:toTaxon
84 m132 NA NA NA ResourceMeta tc:toTaxon
85 m133 NA NA NA ResourceMeta tc:toTaxon
86 m134 NA NA NA ResourceMeta tc:toTaxon
87 m135 NA NA NA ResourceMeta tc:toTaxon
88 m136 NA NA NA ResourceMeta tc:toTaxon
89 m137 NA NA NA ResourceMeta tc:toTaxon
90 m138 NA NA NA ResourceMeta tc:toTaxon
91 m139 NA NA NA ResourceMeta tc:toTaxon
92 m140 NA NA NA ResourceMeta tc:toTaxon
93 m141 NA NA NA ResourceMeta tc:toTaxon
94 m142 NA NA NA ResourceMeta tc:toTaxon
95 m143 NA NA NA ResourceMeta tc:toTaxon
96 m144 NA NA NA ResourceMeta tc:toTaxon
97 m145 NA NA NA ResourceMeta tc:toTaxon
98 m146 NA NA NA ResourceMeta tc:toTaxon
99 m147 NA NA NA ResourceMeta tc:toTaxon
100 m148 NA NA NA ResourceMeta tc:toTaxon
101 m149 NA NA NA ResourceMeta tc:toTaxon
102 m150 NA NA NA ResourceMeta tc:toTaxon
103 m151 NA NA NA ResourceMeta tc:toTaxon
104 m152 NA NA NA ResourceMeta tc:toTaxon
105 m153 NA NA NA ResourceMeta tc:toTaxon
106 m154 NA NA NA ResourceMeta tc:toTaxon
107 m155 NA NA NA ResourceMeta tc:toTaxon
108 m156 NA NA NA ResourceMeta tc:toTaxon
109 m157 NA NA NA ResourceMeta tc:toTaxon
110 m158 NA NA NA ResourceMeta tc:toTaxon
111 m159 NA NA NA ResourceMeta tc:toTaxon
112 m160 NA NA NA ResourceMeta tc:toTaxon
113 m161 NA NA NA ResourceMeta tc:toTaxon
114 m162 NA NA NA ResourceMeta tc:toTaxon
115 m163 NA NA NA ResourceMeta tc:toTaxon
116 m164 NA NA NA ResourceMeta tc:toTaxon
117 m165 NA NA NA ResourceMeta tc:toTaxon
118 m166 NA NA NA ResourceMeta tc:toTaxon
119 m167 NA NA NA ResourceMeta tc:toTaxon
120 m168 NA NA NA ResourceMeta tc:toTaxon
121 m169 NA NA NA ResourceMeta tc:toTaxon
122 m170 NA NA NA ResourceMeta tc:toTaxon
123 m171 NA NA NA ResourceMeta tc:toTaxon
124 m172 NA NA NA ResourceMeta tc:toTaxon
125 m173 NA NA NA ResourceMeta tc:toTaxon
126 m174 NA NA NA ResourceMeta tc:toTaxon
127 m175 NA NA NA ResourceMeta tc:toTaxon
128 m176 NA NA NA ResourceMeta tc:toTaxon
129 m177 NA NA NA ResourceMeta tc:toTaxon
130 m178 NA NA NA ResourceMeta tc:toTaxon
131 m179 NA NA NA ResourceMeta tc:toTaxon
132 m180 NA NA NA ResourceMeta tc:toTaxon
133 m181 NA NA NA ResourceMeta tc:toTaxon
134 m182 NA NA NA ResourceMeta tc:toTaxon
135 m183 NA NA NA ResourceMeta tc:toTaxon
136 m184 NA NA NA ResourceMeta tc:toTaxon
137 m185 NA NA NA ResourceMeta tc:toTaxon
138 m186 NA NA NA ResourceMeta tc:toTaxon
139 m187 NA NA NA ResourceMeta tc:toTaxon
140 m188 NA NA NA ResourceMeta tc:toTaxon
141 m189 NA NA NA ResourceMeta tc:toTaxon
142 m190 NA NA NA ResourceMeta tc:toTaxon
143 m191 NA NA NA ResourceMeta tc:toTaxon
144 m192 NA NA NA ResourceMeta tc:toTaxon
145 m193 NA NA NA ResourceMeta tc:toTaxon
146 m194 NA NA NA ResourceMeta tc:toTaxon
147 m195 NA NA NA ResourceMeta tc:toTaxon
148 m196 NA NA NA ResourceMeta tc:toTaxon
149 m197 NA NA NA ResourceMeta tc:toTaxon
150 m198 NA NA NA ResourceMeta tc:toTaxon
151 m199 NA NA NA ResourceMeta tc:toTaxon
152 m200 NA NA NA ResourceMeta tc:toTaxon
153 m201 NA NA NA ResourceMeta tc:toTaxon
154 m202 NA NA NA ResourceMeta tc:toTaxon
155 m203 NA NA NA ResourceMeta tc:toTaxon
156 m204 NA NA NA ResourceMeta tc:toTaxon
157 m205 NA NA NA ResourceMeta tc:toTaxon
158 m206 NA NA NA ResourceMeta tc:toTaxon
159 m207 NA NA NA ResourceMeta tc:toTaxon
160 m208 NA NA NA ResourceMeta tc:toTaxon
161 m209 NA NA NA ResourceMeta tc:toTaxon
162 m210 NA NA NA ResourceMeta tc:toTaxon
163 m211 NA NA NA ResourceMeta tc:toTaxon
164 m212 NA NA NA ResourceMeta tc:toTaxon
165 m213 NA NA NA ResourceMeta tc:toTaxon
166 m214 NA NA NA ResourceMeta tc:toTaxon
167 m215 NA NA NA ResourceMeta tc:toTaxon
168 m216 NA NA NA ResourceMeta tc:toTaxon
169 m217 NA NA NA ResourceMeta tc:toTaxon
170 m218 NA NA NA ResourceMeta tc:toTaxon
171 m219 NA NA NA ResourceMeta tc:toTaxon
172 m220 NA NA NA ResourceMeta tc:toTaxon
173 m221 NA NA NA ResourceMeta tc:toTaxon
174 m222 NA NA NA ResourceMeta tc:toTaxon
175 m223 NA NA NA ResourceMeta tc:toTaxon
176 m224 NA NA NA ResourceMeta tc:toTaxon
177 m225 NA NA NA ResourceMeta tc:toTaxon
178 m226 NA NA NA ResourceMeta tc:toTaxon
179 m227 NA NA NA ResourceMeta tc:toTaxon
180 m228 NA NA NA ResourceMeta tc:toTaxon
181 m229 NA NA NA ResourceMeta tc:toTaxon
182 m230 NA NA NA ResourceMeta tc:toTaxon
183 m231 NA NA NA ResourceMeta tc:toTaxon
184 m232 NA NA NA ResourceMeta tc:toTaxon
185 m233 NA NA NA ResourceMeta tc:toTaxon
186 m234 NA NA NA ResourceMeta tc:toTaxon
187 m235 NA NA NA ResourceMeta tc:toTaxon
188 m236 NA NA NA ResourceMeta tc:toTaxon
189 m237 NA NA NA ResourceMeta tc:toTaxon
190 m238 NA NA NA ResourceMeta tc:toTaxon
191 m239 NA NA NA ResourceMeta tc:toTaxon
192 m240 NA NA NA ResourceMeta tc:toTaxon
193 m241 NA NA NA ResourceMeta tc:toTaxon
194 m242 NA NA NA ResourceMeta tc:toTaxon
195 m243 NA NA NA ResourceMeta tc:toTaxon
196 m244 NA NA NA ResourceMeta tc:toTaxon
197 m245 NA NA NA ResourceMeta tc:toTaxon
198 m246 NA NA NA ResourceMeta tc:toTaxon
199 m247 NA NA NA ResourceMeta tc:toTaxon
200 m248 NA NA NA ResourceMeta tc:toTaxon
201 m249 NA NA NA ResourceMeta tc:toTaxon
202 m250 NA NA NA ResourceMeta tc:toTaxon
203 m251 NA NA NA ResourceMeta tc:toTaxon
204 m252 NA NA NA ResourceMeta tc:toTaxon
205 m253 NA NA NA ResourceMeta tc:toTaxon
206 m254 NA NA NA ResourceMeta tc:toTaxon
207 m255 NA NA NA ResourceMeta tc:toTaxon
208 m256 NA NA NA ResourceMeta tc:toTaxon
209 m257 NA NA NA ResourceMeta tc:toTaxon
210 m258 NA NA NA ResourceMeta tc:toTaxon
211 m259 NA NA NA ResourceMeta tc:toTaxon
212 m260 NA NA NA ResourceMeta tc:toTaxon
213 m261 NA NA NA ResourceMeta tc:toTaxon
214 m262 NA NA NA ResourceMeta tc:toTaxon
215 m263 NA NA NA ResourceMeta tc:toTaxon
216 m264 NA NA NA ResourceMeta tc:toTaxon
217 m265 NA NA NA ResourceMeta tc:toTaxon
href otu otus
1 http://ncbi.nlm.nih.gov/taxonomy/54135 ou24 os2
2 http://ncbi.nlm.nih.gov/taxonomy/122248 ou25 os2
3 http://ncbi.nlm.nih.gov/taxonomy/30590 ou26 os2
4 http://ncbi.nlm.nih.gov/taxonomy/9502 ou27 os2
5 http://ncbi.nlm.nih.gov/taxonomy/182256 ou29 os2
6 http://ncbi.nlm.nih.gov/taxonomy/30589 ou30 os2
7 http://ncbi.nlm.nih.gov/taxonomy/182253 ou31 os2
8 http://ncbi.nlm.nih.gov/taxonomy/121123 ou32 os2
9 http://ncbi.nlm.nih.gov/taxonomy/9503 ou33 os2
10 http://ncbi.nlm.nih.gov/taxonomy/30591 ou34 os2
11 http://ncbi.nlm.nih.gov/taxonomy/361674 ou35 os2
12 http://ncbi.nlm.nih.gov/taxonomy/867331 ou37 os2
13 http://ncbi.nlm.nih.gov/taxonomy/43147 ou38 os2
14 http://ncbi.nlm.nih.gov/taxonomy/37293 ou40 os2
15 http://ncbi.nlm.nih.gov/taxonomy/57175 ou41 os2
16 http://ncbi.nlm.nih.gov/taxonomy/9505 ou42 os2
17 http://ncbi.nlm.nih.gov/taxonomy/57176 ou43 os2
18 http://ncbi.nlm.nih.gov/taxonomy/300161 ou44 os2
19 http://ncbi.nlm.nih.gov/taxonomy/261739 ou45 os2
20 http://ncbi.nlm.nih.gov/taxonomy/9507 ou46 os2
21 http://ncbi.nlm.nih.gov/taxonomy/118643 ou47 os2
22 http://ncbi.nlm.nih.gov/taxonomy/9508 ou48 os2
23 http://ncbi.nlm.nih.gov/taxonomy/9509 ou49 os2
24 http://ncbi.nlm.nih.gov/taxonomy/1529884 ou50 os2
25 http://ncbi.nlm.nih.gov/taxonomy/9510 ou51 os2
26 http://ncbi.nlm.nih.gov/taxonomy/122246 ou52 os2
27 http://ncbi.nlm.nih.gov/taxonomy/30594 ou53 os2
28 http://ncbi.nlm.nih.gov/taxonomy/30596 ou54 os2
29 http://ncbi.nlm.nih.gov/taxonomy/70825 ou55 os2
30 http://ncbi.nlm.nih.gov/taxonomy/1812042 ou56 os2
31 http://ncbi.nlm.nih.gov/taxonomy/867332 ou57 os2
32 http://ncbi.nlm.nih.gov/taxonomy/1812037 ou58 os2
33 http://ncbi.nlm.nih.gov/taxonomy/202457 ou59 os2
34 http://ncbi.nlm.nih.gov/taxonomy/230833 ou60 os2
35 http://ncbi.nlm.nih.gov/taxonomy/1290433 ou61 os2
36 http://ncbi.nlm.nih.gov/taxonomy/78255 ou62 os2
37 http://ncbi.nlm.nih.gov/taxonomy/9523 ou64 os2
38 http://ncbi.nlm.nih.gov/taxonomy/70814 ou67 os2
39 http://ncbi.nlm.nih.gov/taxonomy/30592 ou68 os2
40 http://ncbi.nlm.nih.gov/taxonomy/9495 ou69 os2
41 http://ncbi.nlm.nih.gov/taxonomy/9482 ou70 os2
42 http://ncbi.nlm.nih.gov/taxonomy/57375 ou71 os2
43 http://ncbi.nlm.nih.gov/taxonomy/1346251 ou72 os2
44 http://ncbi.nlm.nih.gov/taxonomy/52231 ou73 os2
45 http://ncbi.nlm.nih.gov/taxonomy/52232 ou74 os2
46 http://ncbi.nlm.nih.gov/taxonomy/9483 ou75 os2
47 http://ncbi.nlm.nih.gov/taxonomy/867363 ou76 os2
48 http://ncbi.nlm.nih.gov/taxonomy/57378 ou77 os2
49 http://ncbi.nlm.nih.gov/taxonomy/9493 ou78 os2
50 http://ncbi.nlm.nih.gov/taxonomy/9514 ou79 os2
51 http://ncbi.nlm.nih.gov/taxonomy/9515 ou80 os2
52 http://ncbi.nlm.nih.gov/taxonomy/9516 ou81 os2
53 http://ncbi.nlm.nih.gov/taxonomy/37295 ou82 os2
54 http://ncbi.nlm.nih.gov/taxonomy/255237 ou83 os2
55 http://ncbi.nlm.nih.gov/taxonomy/9532 ou84 os2
56 http://ncbi.nlm.nih.gov/taxonomy/9530 ou85 os2
57 http://ncbi.nlm.nih.gov/taxonomy/36223 ou86 os2
58 http://ncbi.nlm.nih.gov/taxonomy/303588 ou87 os2
59 http://ncbi.nlm.nih.gov/taxonomy/9535 ou88 os2
60 http://ncbi.nlm.nih.gov/taxonomy/36224 ou89 os2
61 http://ncbi.nlm.nih.gov/taxonomy/1137048 ou90 os2
62 http://ncbi.nlm.nih.gov/taxonomy/161496 ou91 os2
63 http://ncbi.nlm.nih.gov/taxonomy/167130 ou92 os2
64 http://ncbi.nlm.nih.gov/taxonomy/9536 ou93 os2
65 http://ncbi.nlm.nih.gov/taxonomy/100224 ou94 os2
66 http://ncbi.nlm.nih.gov/taxonomy/36225 ou95 os2
67 http://ncbi.nlm.nih.gov/taxonomy/36226 ou96 os2
68 http://ncbi.nlm.nih.gov/taxonomy/36227 ou97 os2
69 http://ncbi.nlm.nih.gov/taxonomy/36228 ou98 os2
70 http://ncbi.nlm.nih.gov/taxonomy/100487 ou99 os2
71 http://ncbi.nlm.nih.gov/taxonomy/102108 ou100 os2
72 http://ncbi.nlm.nih.gov/taxonomy/147649 ou101 os2
73 http://ncbi.nlm.nih.gov/taxonomy/1579530 ou102 os2
74 http://ncbi.nlm.nih.gov/taxonomy/147650 ou103 os2
75 http://ncbi.nlm.nih.gov/taxonomy/263448 ou104 os2
76 http://ncbi.nlm.nih.gov/taxonomy/47177 ou105 os2
77 http://ncbi.nlm.nih.gov/taxonomy/9460 ou106 os2
78 http://ncbi.nlm.nih.gov/taxonomy/198627 ou107 os2
79 http://ncbi.nlm.nih.gov/taxonomy/9525 ou108 os2
80 http://ncbi.nlm.nih.gov/taxonomy/9534 ou109 os2
81 http://ncbi.nlm.nih.gov/taxonomy/54131 ou110 os2
82 http://ncbi.nlm.nih.gov/taxonomy/33548 ou111 os2
83 http://ncbi.nlm.nih.gov/taxonomy/9572 ou112 os2
84 http://ncbi.nlm.nih.gov/taxonomy/517012 ou113 os2
85 http://ncbi.nlm.nih.gov/taxonomy/31869 ou114 os2
86 http://ncbi.nlm.nih.gov/taxonomy/9538 ou115 os2
87 http://ncbi.nlm.nih.gov/taxonomy/13514 ou116 os2
88 http://ncbi.nlm.nih.gov/taxonomy/13515 ou117 os2
89 http://ncbi.nlm.nih.gov/taxonomy/30602 ou118 os2
90 http://ncbi.nlm.nih.gov/taxonomy/34828 ou119 os2
91 http://ncbi.nlm.nih.gov/taxonomy/34829 ou120 os2
92 http://ncbi.nlm.nih.gov/taxonomy/261736 ou121 os2
93 http://ncbi.nlm.nih.gov/taxonomy/34830 ou123 os2
94 http://ncbi.nlm.nih.gov/taxonomy/111173 ou124 os2
95 http://ncbi.nlm.nih.gov/taxonomy/135486 ou125 os2
96 http://ncbi.nlm.nih.gov/taxonomy/30609 ou126 os2
97 http://ncbi.nlm.nih.gov/taxonomy/9465 ou127 os2
98 http://ncbi.nlm.nih.gov/taxonomy/89672 ou128 os2
99 http://ncbi.nlm.nih.gov/taxonomy/111174 ou129 os2
100 http://ncbi.nlm.nih.gov/taxonomy/9593 ou130 os2
101 http://ncbi.nlm.nih.gov/taxonomy/122222 ou131 os2
102 http://ncbi.nlm.nih.gov/taxonomy/13557 ou132 os2
103 http://ncbi.nlm.nih.gov/taxonomy/1328070 ou133 os2
104 http://ncbi.nlm.nih.gov/taxonomy/9606 ou134 os2
105 http://ncbi.nlm.nih.gov/taxonomy/9579 ou135 os2
106 http://ncbi.nlm.nih.gov/taxonomy/29089 ou136 os2
107 http://ncbi.nlm.nih.gov/taxonomy/61852 ou137 os2
108 http://ncbi.nlm.nih.gov/taxonomy/61851 ou138 os2
109 http://ncbi.nlm.nih.gov/taxonomy/9587 ou139 os2
110 http://ncbi.nlm.nih.gov/taxonomy/9580 ou140 os2
111 http://ncbi.nlm.nih.gov/taxonomy/61853 ou141 os2
112 http://ncbi.nlm.nih.gov/taxonomy/81572 ou142 os2
113 http://ncbi.nlm.nih.gov/taxonomy/9588 ou143 os2
114 http://ncbi.nlm.nih.gov/taxonomy/9589 ou144 os2
115 http://ncbi.nlm.nih.gov/taxonomy/9590 ou145 os2
116 http://ncbi.nlm.nih.gov/taxonomy/34827 ou146 os2
117 http://ncbi.nlm.nih.gov/taxonomy/9519 ou148 os2
118 http://ncbi.nlm.nih.gov/taxonomy/9447 ou149 os2
119 http://ncbi.nlm.nih.gov/taxonomy/58710 ou152 os2
120 http://ncbi.nlm.nih.gov/taxonomy/30588 ou153 os2
121 http://ncbi.nlm.nih.gov/taxonomy/78583 ou154 os2
122 http://ncbi.nlm.nih.gov/taxonomy/122230 ou155 os2
123 http://ncbi.nlm.nih.gov/taxonomy/100475 ou156 os2
124 http://ncbi.nlm.nih.gov/taxonomy/185457 ou157 os2
125 http://ncbi.nlm.nih.gov/taxonomy/9453 ou158 os2
126 http://ncbi.nlm.nih.gov/taxonomy/78866 ou159 os2
127 http://ncbi.nlm.nih.gov/taxonomy/78584 ou160 os2
128 http://ncbi.nlm.nih.gov/taxonomy/75567 ou161 os2
129 http://ncbi.nlm.nih.gov/taxonomy/9468 ou162 os2
130 http://ncbi.nlm.nih.gov/taxonomy/9540 ou163 os2
131 http://ncbi.nlm.nih.gov/taxonomy/9551 ou164 os2
132 http://ncbi.nlm.nih.gov/taxonomy/78449 ou165 os2
133 http://ncbi.nlm.nih.gov/taxonomy/9541 ou166 os2
134 http://ncbi.nlm.nih.gov/taxonomy/9542 ou167 os2
135 http://ncbi.nlm.nih.gov/taxonomy/90383 ou168 os2
136 http://ncbi.nlm.nih.gov/taxonomy/9544 ou169 os2
137 http://ncbi.nlm.nih.gov/taxonomy/9545 ou170 os2
138 http://ncbi.nlm.nih.gov/taxonomy/54600 ou171 os2
139 http://ncbi.nlm.nih.gov/taxonomy/90385 ou172 os2
140 http://ncbi.nlm.nih.gov/taxonomy/9548 ou173 os2
141 http://ncbi.nlm.nih.gov/taxonomy/54601 ou174 os2
142 http://ncbi.nlm.nih.gov/taxonomy/9552 ou175 os2
143 http://ncbi.nlm.nih.gov/taxonomy/9546 ou176 os2
144 http://ncbi.nlm.nih.gov/taxonomy/54602 ou177 os2
145 http://ncbi.nlm.nih.gov/taxonomy/40843 ou178 os2
146 http://ncbi.nlm.nih.gov/taxonomy/9568 ou179 os2
147 http://ncbi.nlm.nih.gov/taxonomy/9561 ou180 os2
148 http://ncbi.nlm.nih.gov/taxonomy/47180 ou181 os2
149 http://ncbi.nlm.nih.gov/taxonomy/30608 ou182 os2
150 http://ncbi.nlm.nih.gov/taxonomy/122232 ou183 os2
151 http://ncbi.nlm.nih.gov/taxonomy/36231 ou184 os2
152 http://ncbi.nlm.nih.gov/taxonomy/170207 ou185 os2
153 http://ncbi.nlm.nih.gov/taxonomy/43780 ou186 os2
154 http://ncbi.nlm.nih.gov/taxonomy/9470 ou187 os2
155 http://ncbi.nlm.nih.gov/taxonomy/101278 ou188 os2
156 http://ncbi.nlm.nih.gov/taxonomy/9463 ou189 os2
157 http://ncbi.nlm.nih.gov/taxonomy/30611 ou190 os2
158 http://ncbi.nlm.nih.gov/taxonomy/9597 ou191 os2
159 http://ncbi.nlm.nih.gov/taxonomy/9598 ou192 os2
160 http://ncbi.nlm.nih.gov/taxonomy/9557 ou193 os2
161 http://ncbi.nlm.nih.gov/taxonomy/9472 ou194 os2
162 http://ncbi.nlm.nih.gov/taxonomy/261734 ou195 os2
163 http://ncbi.nlm.nih.gov/taxonomy/30598 ou198 os2
164 http://ncbi.nlm.nih.gov/taxonomy/595220 ou199 os2
165 http://ncbi.nlm.nih.gov/taxonomy/43777 ou200 os2
166 http://ncbi.nlm.nih.gov/taxonomy/9600 ou201 os2
167 http://ncbi.nlm.nih.gov/taxonomy/78452 ou202 os2
168 http://ncbi.nlm.nih.gov/taxonomy/78453 ou203 os2
169 http://ncbi.nlm.nih.gov/taxonomy/1046092 ou204 os2
170 http://ncbi.nlm.nih.gov/taxonomy/1046093 ou205 os2
171 http://ncbi.nlm.nih.gov/taxonomy/78451 ou206 os2
172 http://ncbi.nlm.nih.gov/taxonomy/1046098 ou207 os2
173 http://ncbi.nlm.nih.gov/taxonomy/1046101 ou208 os2
174 http://ncbi.nlm.nih.gov/taxonomy/1046103 ou209 os2
175 http://ncbi.nlm.nih.gov/taxonomy/164648 ou210 os2
176 http://ncbi.nlm.nih.gov/taxonomy/373033 ou214 os2
177 http://ncbi.nlm.nih.gov/taxonomy/83281 ou215 os2
178 http://ncbi.nlm.nih.gov/taxonomy/30601 ou216 os2
179 http://ncbi.nlm.nih.gov/taxonomy/34825 ou217 os2
180 http://ncbi.nlm.nih.gov/taxonomy/66062 ou218 os2
181 http://ncbi.nlm.nih.gov/taxonomy/61621 ou219 os2
182 http://ncbi.nlm.nih.gov/taxonomy/224329 ou220 os2
183 http://ncbi.nlm.nih.gov/taxonomy/54133 ou221 os2
184 http://ncbi.nlm.nih.gov/taxonomy/61622 ou222 os2
185 http://ncbi.nlm.nih.gov/taxonomy/37588 ou223 os2
186 http://ncbi.nlm.nih.gov/taxonomy/9487 ou224 os2
187 http://ncbi.nlm.nih.gov/taxonomy/43778 ou225 os2
188 http://ncbi.nlm.nih.gov/taxonomy/9491 ou226 os2
189 http://ncbi.nlm.nih.gov/taxonomy/1079039 ou227 os2
190 http://ncbi.nlm.nih.gov/taxonomy/78454 ou228 os2
191 http://ncbi.nlm.nih.gov/taxonomy/290597 ou229 os2
192 http://ncbi.nlm.nih.gov/taxonomy/30586 ou230 os2
193 http://ncbi.nlm.nih.gov/taxonomy/9488 ou231 os2
194 http://ncbi.nlm.nih.gov/taxonomy/9489 ou232 os2
195 http://ncbi.nlm.nih.gov/taxonomy/9490 ou233 os2
196 http://ncbi.nlm.nih.gov/taxonomy/122388 ou234 os2
197 http://ncbi.nlm.nih.gov/taxonomy/27679 ou235 os2
198 http://ncbi.nlm.nih.gov/taxonomy/70928 ou236 os2
199 http://ncbi.nlm.nih.gov/taxonomy/9521 ou237 os2
200 http://ncbi.nlm.nih.gov/taxonomy/66265 ou238 os2
201 http://ncbi.nlm.nih.gov/taxonomy/1561161 ou239 os2
202 http://ncbi.nlm.nih.gov/taxonomy/88029 ou240 os2
203 http://ncbi.nlm.nih.gov/taxonomy/9477 ou241 os2
204 http://ncbi.nlm.nih.gov/taxonomy/449501 ou242 os2
205 http://ncbi.nlm.nih.gov/taxonomy/662464 ou244 os2
206 http://ncbi.nlm.nih.gov/taxonomy/1868482 ou245 os2
207 http://ncbi.nlm.nih.gov/taxonomy/9565 ou246 os2
208 http://ncbi.nlm.nih.gov/taxonomy/222416 ou247 os2
209 http://ncbi.nlm.nih.gov/taxonomy/122765 ou248 os2
210 http://ncbi.nlm.nih.gov/taxonomy/54180 ou249 os2
211 http://ncbi.nlm.nih.gov/taxonomy/164650 ou250 os2
212 http://ncbi.nlm.nih.gov/taxonomy/66063 ou251 os2
213 http://ncbi.nlm.nih.gov/taxonomy/54181 ou252 os2
214 http://ncbi.nlm.nih.gov/taxonomy/61618 ou253 os2
215 http://ncbi.nlm.nih.gov/taxonomy/164651 ou254 os2
216 http://ncbi.nlm.nih.gov/taxonomy/54137 ou255 os2
217 http://ncbi.nlm.nih.gov/taxonomy/9455 ou256 os2taxa otu label about xsi.type otus
1 ou24 Allenopithecus_nigroviridis #ou24 NA os2
2 ou25 Allocebus_trichotis #ou25 NA os2
3 ou26 Alouatta_belzebul #ou26 NA os2
4 ou27 Alouatta_caraya #ou27 NA os2
5 ou28 Alouatta_coibensis #ou28 NA os2
6 ou29 Alouatta_fusca #ou29 NA os2
7 ou30 Alouatta_palliata #ou30 NA os2
8 ou31 Alouatta_pigra #ou31 NA os2
9 ou32 Alouatta_sara #ou32 NA os2
10 ou33 Alouatta_seniculus #ou33 NA os2
11 ou34 Aotus_azarai #ou34 NA os2
12 ou35 Aotus_brumbacki #ou35 NA os2
13 ou36 Aotus_hershkovitzi #ou36 NA os2
14 ou37 Aotus_infulatus #ou37 NA os2
15 ou38 Aotus_lemurinus #ou38 NA os2
16 ou39 Aotus_miconax #ou39 NA os2
17 ou40 Aotus_nancymaae #ou40 NA os2
18 ou41 Aotus_nigriceps #ou41 NA os2
19 ou42 Aotus_trivirgatus #ou42 NA os2
20 ou43 Aotus_vociferans #ou43 NA os2
21 ou44 Arctocebus_aureus #ou44 NA os2
22 ou45 Arctocebus_calabarensis #ou45 NA os2
23 ou46 Ateles_belzebuth #ou46 NA os2
24 ou47 Ateles_chamek #ou47 NA os2
25 ou48 Ateles_fusciceps #ou48 NA os2
26 ou49 Ateles_geoffroyi #ou49 NA os2
27 ou50 Ateles_marginatus #ou50 NA os2
28 ou51 Ateles_paniscus #ou51 NA os2
29 ou52 Avahi_laniger #ou52 NA os2
30 ou53 Brachyteles_arachnoides #ou53 NA os2
31 ou54 Cacajao_calvus #ou54 NA os2
32 ou55 Cacajao_melanocephalus #ou55 NA os2
33 ou56 Callicebus_brunneus #ou56 NA os2
34 ou57 Callicebus_caligatus #ou57 NA os2
35 ou58 Callicebus_cinerascens #ou58 NA os2
36 ou59 Callicebus_cupreus #ou59 NA os2
37 ou60 Callicebus_donacophilus #ou60 NA os2
38 ou61 Callicebus_dubius #ou61 NA os2
39 ou62 Callicebus_hoffmannsi #ou62 NA os2
40 ou63 Callicebus_modestus #ou63 NA os2
41 ou64 Callicebus_moloch #ou64 NA os2
42 ou65 Callicebus_oenanthe #ou65 NA os2
43 ou66 Callicebus_olallae #ou66 NA os2
44 ou67 Callicebus_personatus #ou67 NA os2
45 ou68 Callicebus_torquatus #ou68 NA os2
46 ou69 Callimico_goeldii #ou69 NA os2
47 ou70 Callithrix_argentata #ou70 NA os2
48 ou71 Callithrix_aurita #ou71 NA os2
49 ou72 Callithrix_flaviceps #ou72 NA os2
50 ou73 Callithrix_geoffroyi #ou73 NA os2
51 ou74 Callithrix_humeralifera #ou74 NA os2
52 ou75 Callithrix_jacchus #ou75 NA os2
53 ou76 Callithrix_kuhlii #ou76 NA os2
54 ou77 Callithrix_penicillata #ou77 NA os2
55 ou78 Callithrix_pygmaea #ou78 NA os2
56 ou79 Cebus_albifrons #ou79 NA os2
57 ou80 Cebus_apella #ou80 NA os2
58 ou81 Cebus_capucinus #ou81 NA os2
59 ou82 Cebus_olivaceus #ou82 NA os2
60 ou83 Cercocebus_agilis #ou83 NA os2
61 ou84 Cercocebus_galeritus #ou84 NA os2
62 ou85 Cercocebus_torquatus #ou85 NA os2
63 ou86 Cercopithecus_ascanius #ou86 NA os2
64 ou87 Cercopithecus_campbelli #ou87 NA os2
65 ou88 Cercopithecus_cephus #ou88 NA os2
66 ou89 Cercopithecus_diana #ou89 NA os2
67 ou90 Cercopithecus_dryas #ou90 NA os2
68 ou91 Cercopithecus_erythrogaster #ou91 NA os2
69 ou92 Cercopithecus_erythrotis #ou92 NA os2
70 ou93 Cercopithecus_hamlyni #ou93 NA os2
71 ou94 Cercopithecus_lhoesti #ou94 NA os2
72 ou95 Cercopithecus_mitis #ou95 NA os2
73 ou96 Cercopithecus_mona #ou96 NA os2
74 ou97 Cercopithecus_neglectus #ou97 NA os2
75 ou98 Cercopithecus_nictitans #ou98 NA os2
76 ou99 Cercopithecus_petaurista #ou99 NA os2
77 ou100 Cercopithecus_pogonias #ou100 NA os2
78 ou101 Cercopithecus_preussi #ou101 NA os2
79 ou102 Cercopithecus_sclateri #ou102 NA os2
80 ou103 Cercopithecus_solatus #ou103 NA os2
81 ou104 Cercopithecus_wolfi #ou104 NA os2
82 ou105 Cheirogaleus_major #ou105 NA os2
83 ou106 Cheirogaleus_medius #ou106 NA os2
84 ou107 Chiropotes_albinasus #ou107 NA os2
85 ou108 Chiropotes_satanas #ou108 NA os2
86 ou109 Chlorocebus_aethiops #ou109 NA os2
87 ou110 Colobus_angolensis #ou110 NA os2
88 ou111 Colobus_guereza #ou111 NA os2
89 ou112 Colobus_polykomos #ou112 NA os2
90 ou113 Colobus_satanas #ou113 NA os2
91 ou114 Daubentonia_madagascariensis #ou114 NA os2
92 ou115 Erythrocebus_patas #ou115 NA os2
93 ou116 Eulemur_coronatus #ou116 NA os2
94 ou117 Eulemur_fulvus #ou117 NA os2
95 ou118 Eulemur_macaco #ou118 NA os2
96 ou119 Eulemur_mongoz #ou119 NA os2
97 ou120 Eulemur_rubriventer #ou120 NA os2
98 ou121 Euoticus_elegantulus #ou121 NA os2
99 ou122 Euoticus_pallidus #ou122 NA os2
100 ou123 Galago_alleni #ou123 NA os2
101 ou124 Galago_gallarum #ou124 NA os2
102 ou125 Galago_matschiei #ou125 NA os2
103 ou126 Galago_moholi #ou126 NA os2
104 ou127 Galago_senegalensis #ou127 NA os2
105 ou128 Galagoides_demidoff #ou128 NA os2
106 ou129 Galagoides_zanzibaricus #ou129 NA os2
107 ou130 Gorilla_gorilla #ou130 NA os2
108 ou131 Hapalemur_aureus #ou131 NA os2
109 ou132 Hapalemur_griseus #ou132 NA os2
110 ou133 Hapalemur_simus #ou133 NA os2
111 ou134 Homo_sapiens #ou134 NA os2
112 ou135 Hylobates_agilis #ou135 NA os2
113 ou136 Hylobates_concolor #ou136 NA os2
114 ou137 Hylobates_gabriellae #ou137 NA os2
115 ou138 Hylobates_hoolock #ou138 NA os2
116 ou139 Hylobates_klossii #ou139 NA os2
117 ou140 Hylobates_lar #ou140 NA os2
118 ou141 Hylobates_leucogenys #ou141 NA os2
119 ou142 Hylobates_moloch #ou142 NA os2
120 ou143 Hylobates_muelleri #ou143 NA os2
121 ou144 Hylobates_pileatus #ou144 NA os2
122 ou145 Hylobates_syndactylus #ou145 NA os2
123 ou146 Indri_indri #ou146 NA os2
124 ou147 Lagothrix_flavicauda #ou147 NA os2
125 ou148 Lagothrix_lagotricha #ou148 NA os2
126 ou149 Lemur_catta #ou149 NA os2
127 ou150 Leontopithecus_caissara #ou150 NA os2
128 ou151 Leontopithecus_chrysomela #ou151 NA os2
129 ou152 Leontopithecus_chrysopygus #ou152 NA os2
130 ou153 Leontopithecus_rosalia #ou153 NA os2
131 ou154 Lepilemur_dorsalis #ou154 NA os2
132 ou155 Lepilemur_edwardsi #ou155 NA os2
133 ou156 Lepilemur_leucopus #ou156 NA os2
134 ou157 Lepilemur_microdon #ou157 NA os2
135 ou158 Lepilemur_mustelinus #ou158 NA os2
136 ou159 Lepilemur_ruficaudatus #ou159 NA os2
137 ou160 Lepilemur_septentrionalis #ou160 NA os2
138 ou161 Lophocebus_albigena #ou161 NA os2
139 ou162 Loris_tardigradus #ou162 NA os2
140 ou163 Macaca_arctoides #ou163 NA os2
141 ou164 Macaca_assamensis #ou164 NA os2
142 ou165 Macaca_cyclopis #ou165 NA os2
143 ou166 Macaca_fascicularis #ou166 NA os2
144 ou167 Macaca_fuscata #ou167 NA os2
145 ou168 Macaca_maura #ou168 NA os2
146 ou169 Macaca_mulatta #ou169 NA os2
147 ou170 Macaca_nemestrina #ou170 NA os2
148 ou171 Macaca_nigra #ou171 NA os2
149 ou172 Macaca_ochreata #ou172 NA os2
150 ou173 Macaca_radiata #ou173 NA os2
151 ou174 Macaca_silenus #ou174 NA os2
152 ou175 Macaca_sinica #ou175 NA os2
153 ou176 Macaca_sylvanus #ou176 NA os2
154 ou177 Macaca_thibetana #ou177 NA os2
155 ou178 Macaca_tonkeana #ou178 NA os2
156 ou179 Mandrillus_leucophaeus #ou179 NA os2
157 ou180 Mandrillus_sphinx #ou180 NA os2
158 ou181 Microcebus_coquereli #ou181 NA os2
159 ou182 Microcebus_murinus #ou182 NA os2
160 ou183 Microcebus_rufus #ou183 NA os2
161 ou184 Miopithecus_talapoin #ou184 NA os2
162 ou185 Nasalis_concolor #ou185 NA os2
163 ou186 Nasalis_larvatus #ou186 NA os2
164 ou187 Nycticebus_coucang #ou187 NA os2
165 ou188 Nycticebus_pygmaeus #ou188 NA os2
166 ou189 Otolemur_crassicaudatus #ou189 NA os2
167 ou190 Otolemur_garnettii #ou190 NA os2
168 ou191 Pan_paniscus #ou191 NA os2
169 ou192 Pan_troglodytes #ou192 NA os2
170 ou193 Papio_hamadryas #ou193 NA os2
171 ou194 Perodicticus_potto #ou194 NA os2
172 ou195 Phaner_furcifer #ou195 NA os2
173 ou196 Pithecia_aequatorialis #ou196 NA os2
174 ou197 Pithecia_albicans #ou197 NA os2
175 ou198 Pithecia_irrorata #ou198 NA os2
176 ou199 Pithecia_monachus #ou199 NA os2
177 ou200 Pithecia_pithecia #ou200 NA os2
178 ou201 Pongo_pygmaeus #ou201 NA os2
179 ou202 Presbytis_comata #ou202 NA os2
180 ou203 Presbytis_femoralis #ou203 NA os2
181 ou204 Presbytis_frontata #ou204 NA os2
182 ou205 Presbytis_hosei #ou205 NA os2
183 ou206 Presbytis_melalophos #ou206 NA os2
184 ou207 Presbytis_potenziani #ou207 NA os2
185 ou208 Presbytis_rubicunda #ou208 NA os2
186 ou209 Presbytis_thomasi #ou209 NA os2
187 ou210 Procolobus_badius #ou210 NA os2
188 ou211 Procolobus_pennantii #ou211 NA os2
189 ou212 Procolobus_preussi #ou212 NA os2
190 ou213 Procolobus_rufomitratus #ou213 NA os2
191 ou214 Procolobus_verus #ou214 NA os2
192 ou215 Propithecus_diadema #ou215 NA os2
193 ou216 Propithecus_tattersalli #ou216 NA os2
194 ou217 Propithecus_verreauxi #ou217 NA os2
195 ou218 Pygathrix_avunculus #ou218 NA os2
196 ou219 Pygathrix_bieti #ou219 NA os2
197 ou220 Pygathrix_brelichi #ou220 NA os2
198 ou221 Pygathrix_nemaeus #ou221 NA os2
199 ou222 Pygathrix_roxellana #ou222 NA os2
200 ou223 Saguinus_bicolor #ou223 NA os2
201 ou224 Saguinus_fuscicollis #ou224 NA os2
202 ou225 Saguinus_geoffroyi #ou225 NA os2
203 ou226 Saguinus_imperator #ou226 NA os2
204 ou227 Saguinus_inustus #ou227 NA os2
205 ou228 Saguinus_labiatus #ou228 NA os2
206 ou229 Saguinus_leucopus #ou229 NA os2
207 ou230 Saguinus_midas #ou230 NA os2
208 ou231 Saguinus_mystax #ou231 NA os2
209 ou232 Saguinus_nigricollis #ou232 NA os2
210 ou233 Saguinus_oedipus #ou233 NA os2
211 ou234 Saguinus_tripartitus #ou234 NA os2
212 ou235 Saimiri_boliviensis #ou235 NA os2
213 ou236 Saimiri_oerstedii #ou236 NA os2
214 ou237 Saimiri_sciureus #ou237 NA os2
215 ou238 Saimiri_ustus #ou238 NA os2
216 ou239 Saimiri_vanzolinii #ou239 NA os2
217 ou240 Semnopithecus_entellus #ou240 NA os2
218 ou241 Tarsius_bancanus #ou241 NA os2
219 ou242 Tarsius_dianae #ou242 NA os2
220 ou243 Tarsius_pumilus #ou243 NA os2
221 ou244 Tarsius_spectrum #ou244 NA os2
222 ou245 Tarsius_syrichta #ou245 NA os2
223 ou246 Theropithecus_gelada #ou246 NA os2
224 ou247 Trachypithecus_auratus #ou247 NA os2
225 ou248 Trachypithecus_cristatus #ou248 NA os2
226 ou249 Trachypithecus_francoisi #ou249 NA os2
227 ou250 Trachypithecus_geei #ou250 NA os2
228 ou251 Trachypithecus_johnii #ou251 NA os2
229 ou252 Trachypithecus_obscurus #ou252 NA os2
230 ou253 Trachypithecus_phayrei #ou253 NA os2
231 ou254 Trachypithecus_pileatus #ou254 NA os2
232 ou255 Trachypithecus_vetulus #ou255 NA os2
233 ou256 Varecia_variegata #ou256 NA os2head(char) taxa x
1 Allenopithecus_nigroviridis 8.465900
2 Allocebus_trichotis 4.368181
3 Alouatta_belzebul 8.729074
4 Alouatta_caraya 8.628735
5 Alouatta_coibensis 8.764053
6 Alouatta_fusca 8.554489Now that we have nice data.frame objects for all our data, it’s easy to join them into the desired table with a few obvious dplyr commands:
taxa %>%
left_join(char, by = c("label" = "taxa")) %>%
left_join(otu_meta, by = "otu") %>%
select(otu, label, x, href) otu label x
1 ou24 Allenopithecus_nigroviridis 8.465900
2 ou25 Allocebus_trichotis 4.368181
3 ou26 Alouatta_belzebul 8.729074
4 ou27 Alouatta_caraya 8.628735
5 ou28 Alouatta_coibensis 8.764053
6 ou29 Alouatta_fusca 8.554489
7 ou30 Alouatta_palliata 8.791790
8 ou31 Alouatta_pigra 8.881836
9 ou32 Alouatta_sara 8.796339
10 ou33 Alouatta_seniculus 8.767173
11 ou34 Aotus_azarai 7.127694
12 ou35 Aotus_brumbacki 6.401917
13 ou36 Aotus_hershkovitzi 6.684612
14 ou37 Aotus_infulatus 7.122867
15 ou38 Aotus_lemurinus 6.781058
16 ou39 Aotus_miconax 6.684612
17 ou40 Aotus_nancymaae 6.678342
18 ou41 Aotus_nigriceps 6.966024
19 ou42 Aotus_trivirgatus 6.815640
20 ou43 Aotus_vociferans 6.771936
21 ou44 Arctocebus_aureus 5.459586
22 ou45 Arctocebus_calabarensis 5.552960
23 ou46 Ateles_belzebuth 8.812843
24 ou47 Ateles_chamek 8.872067
25 ou48 Ateles_fusciceps 9.112728
26 ou49 Ateles_geoffroyi 8.937218
27 ou50 Ateles_marginatus 8.738735
28 ou51 Ateles_paniscus 9.072227
29 ou52 Avahi_laniger 6.927558
30 ou53 Brachyteles_arachnoides 9.268609
31 ou54 Cacajao_calvus 8.137396
32 ou55 Cacajao_melanocephalus 8.051978
33 ou56 Callicebus_brunneus 6.747587
34 ou57 Callicebus_caligatus 6.899723
35 ou58 Callicebus_cinerascens 6.899723
36 ou59 Callicebus_cupreus 7.021084
37 ou60 Callicebus_donacophilus 6.801283
38 ou61 Callicebus_dubius 6.899723
39 ou62 Callicebus_hoffmannsi 6.975414
40 ou63 Callicebus_modestus 6.899723
41 ou64 Callicebus_moloch 6.872128
42 ou65 Callicebus_oenanthe 6.899723
43 ou66 Callicebus_olallae 6.899723
44 ou67 Callicebus_personatus 7.237059
45 ou68 Callicebus_torquatus 7.106606
46 ou69 Callimico_goeldii 6.324359
47 ou70 Callithrix_argentata 5.910797
48 ou71 Callithrix_aurita 5.961005
49 ou72 Callithrix_flaviceps 5.926926
50 ou73 Callithrix_geoffroyi 5.834811
51 ou74 Callithrix_humeralifera 5.926926
52 ou75 Callithrix_jacchus 5.673323
53 ou76 Callithrix_kuhlii 5.926926
54 ou77 Callithrix_penicillata 5.828946
55 ou78 Callithrix_pygmaea 4.828314
56 ou79 Cebus_albifrons 7.832014
57 ou80 Cebus_apella 7.922986
58 ou81 Cebus_capucinus 8.009695
59 ou82 Cebus_olivaceus 7.937375
60 ou83 Cercocebus_agilis 8.870663
61 ou84 Cercocebus_galeritus 8.865029
62 ou85 Cercocebus_torquatus 8.894259
63 ou86 Cercopithecus_ascanius 8.171882
64 ou87 Cercopithecus_campbelli 8.199739
65 ou88 Cercopithecus_cephus 8.143227
66 ou89 Cercopithecus_diana 8.382518
67 ou90 Cercopithecus_dryas 7.930206
68 ou91 Cercopithecus_erythrogaster 8.143227
69 ou92 Cercopithecus_erythrotis 8.086410
70 ou93 Cercopithecus_hamlyni 8.438150
71 ou94 Cercopithecus_lhoesti 8.579229
72 ou95 Cercopithecus_mitis 8.525161
73 ou96 Cercopithecus_mona 8.289037
74 ou97 Cercopithecus_neglectus 8.579229
75 ou98 Cercopithecus_nictitans 8.567886
76 ou99 Cercopithecus_petaurista 8.083329
77 ou100 Cercopithecus_pogonias 8.183118
78 ou101 Cercopithecus_preussi 8.544808
79 ou102 Cercopithecus_sclateri 8.029433
80 ou103 Cercopithecus_solatus 8.567886
81 ou104 Cercopithecus_wolfi 8.089482
82 ou105 Cheirogaleus_major 6.104793
83 ou106 Cheirogaleus_medius 5.283204
84 ou107 Chiropotes_albinasus 7.937375
85 ou108 Chiropotes_satanas 7.996317
86 ou109 Chlorocebus_aethiops 8.301522
87 ou110 Colobus_angolensis 9.103868
88 ou111 Colobus_guereza 9.210340
89 ou112 Colobus_polykomos 9.060680
90 ou113 Colobus_satanas 9.121509
91 ou114 Daubentonia_madagascariensis 7.919356
92 ou115 Erythrocebus_patas 8.988446
93 ou116 Eulemur_coronatus 7.438384
94 ou117 Eulemur_fulvus 7.779049
95 ou118 Eulemur_macaco 7.816014
96 ou119 Eulemur_mongoz 7.478735
97 ou120 Eulemur_rubriventer 7.620705
98 ou121 Euoticus_elegantulus 5.690359
99 ou122 Euoticus_pallidus 5.627621
100 ou123 Galago_alleni 5.521461
101 ou124 Galago_gallarum 5.365976
102 ou125 Galago_matschiei 5.267858
103 ou126 Galago_moholi 5.375278
104 ou127 Galago_senegalensis 5.594711
105 ou128 Galagoides_demidoff 4.206184
106 ou129 Galagoides_zanzibaricus 4.997212
107 ou130 Gorilla_gorilla 11.643954
108 ou131 Hapalemur_aureus 7.358831
109 ou132 Hapalemur_griseus 6.862758
110 ou133 Hapalemur_simus 7.620705
111 ou134 Homo_sapiens 10.980195
112 ou135 Hylobates_agilis 8.675905
113 ou136 Hylobates_concolor 8.768730
114 ou137 Hylobates_gabriellae 9.047821
115 ou138 Hylobates_hoolock 8.809863
116 ou139 Hylobates_klossii 8.674197
117 ou140 Hylobates_lar 8.635865
118 ou141 Hylobates_leucogenys 8.898366
119 ou142 Hylobates_moloch 8.677610
120 ou143 Hylobates_muelleri 8.687779
121 ou144 Hylobates_pileatus 8.630522
122 ou145 Hylobates_syndactylus 9.296518
123 ou146 Indri_indri 9.065315
124 ou147 Lagothrix_flavicauda 9.020390
125 ou148 Lagothrix_lagotricha 8.743532
126 ou149 Lemur_catta 7.878534
127 ou150 Leontopithecus_caissara 6.405228
128 ou151 Leontopithecus_chrysomela 6.352629
129 ou152 Leontopithecus_chrysopygus 6.486161
130 ou153 Leontopithecus_rosalia 6.385194
131 ou154 Lepilemur_dorsalis 6.232448
132 ou155 Lepilemur_edwardsi 6.711740
133 ou156 Lepilemur_leucopus 6.396930
134 ou157 Lepilemur_microdon 6.863803
135 ou158 Lepilemur_mustelinus 6.508769
136 ou159 Lepilemur_ruficaudatus 6.637258
137 ou160 Lepilemur_septentrionalis 6.638568
138 ou161 Lophocebus_albigena 8.903815
139 ou162 Loris_tardigradus 5.517453
140 ou163 Macaca_arctoides 9.148465
141 ou164 Macaca_assamensis 9.054855
142 ou165 Macaca_cyclopis 8.658693
143 ou166 Macaca_fascicularis 8.431635
144 ou167 Macaca_fuscata 9.220291
145 ou168 Macaca_maura 8.894259
146 ou169 Macaca_mulatta 8.771835
147 ou170 Macaca_nemestrina 8.970813
148 ou171 Macaca_nigra 8.906529
149 ou172 Macaca_ochreata 7.919356
150 ou173 Macaca_radiata 8.517193
151 ou174 Macaca_silenus 8.699515
152 ou175 Macaca_sinica 8.446771
153 ou176 Macaca_sylvanus 9.350102
154 ou177 Macaca_thibetana 9.268609
155 ou178 Macaca_tonkeana 9.220291
156 ou179 Mandrillus_leucophaeus 9.560997
157 ou180 Mandrillus_sphinx 9.729134
158 ou181 Microcebus_coquereli 5.793014
159 ou182 Microcebus_murinus 4.198705
160 ou183 Microcebus_rufus 3.881564
161 ou184 Miopithecus_talapoin 7.130899
162 ou185 Nasalis_concolor 8.979354
163 ou186 Nasalis_larvatus 9.417355
164 ou187 Nycticebus_coucang 6.878326
165 ou188 Nycticebus_pygmaeus 5.840642
166 ou189 Otolemur_crassicaudatus 7.130899
167 ou190 Otolemur_garnettii 6.701960
168 ou191 Pan_paniscus 10.468801
169 ou192 Pan_troglodytes 10.716638
170 ou193 Papio_hamadryas 9.735069
171 ou194 Perodicticus_potto 6.984716
172 ou195 Phaner_furcifer 6.016157
173 ou196 Pithecia_aequatorialis 7.774856
174 ou197 Pithecia_albicans 7.937375
175 ou198 Pithecia_irrorata 7.749322
176 ou199 Pithecia_monachus 7.654443
177 ou200 Pithecia_pithecia 7.420579
178 ou201 Pongo_pygmaeus 10.860920
179 ou202 Presbytis_comata 9.039552
180 ou203 Presbytis_femoralis 8.797851
181 ou204 Presbytis_frontata 8.853665
182 ou205 Presbytis_hosei 8.725832
183 ou206 Presbytis_melalophos 8.748305
184 ou207 Presbytis_potenziani 8.774931
185 ou208 Presbytis_rubicunda 8.773385
186 ou209 Presbytis_thomasi 8.765615
187 ou210 Procolobus_badius 8.808369
188 ou211 Procolobus_pennantii 9.122601
189 ou212 Procolobus_preussi 9.094930
190 ou213 Procolobus_rufomitratus 8.995909
191 ou214 Procolobus_verus 8.289037
192 ou215 Propithecus_diadema 8.794825
193 ou216 Propithecus_tattersalli 8.171882
194 ou217 Propithecus_verreauxi 8.202482
195 ou218 Pygathrix_avunculus 9.164296
196 ou219 Pygathrix_bieti 9.118225
197 ou220 Pygathrix_brelichi 9.305651
198 ou221 Pygathrix_nemaeus 9.417355
199 ou222 Pygathrix_roxellana 9.510445
200 ou223 Saguinus_bicolor 6.142037
201 ou224 Saguinus_fuscicollis 5.976351
202 ou225 Saguinus_geoffroyi 6.200509
203 ou226 Saguinus_imperator 6.016157
204 ou227 Saguinus_inustus 6.688355
205 ou228 Saguinus_labiatus 6.234411
206 ou229 Saguinus_leucopus 6.124683
207 ou230 Saguinus_midas 6.293419
208 ou231 Saguinus_mystax 6.326149
209 ou232 Saguinus_nigricollis 6.109248
210 ou233 Saguinus_oedipus 6.139885
211 ou234 Saguinus_tripartitus 5.953243
212 ou235 Saimiri_boliviensis 6.690842
213 ou236 Saimiri_oerstedii 6.570883
214 ou237 Saimiri_sciureus 6.620073
215 ou238 Saimiri_ustus 6.791221
216 ou239 Saimiri_vanzolinii 6.664409
217 ou240 Semnopithecus_entellus 9.441452
218 ou241 Tarsius_bancanus 4.736198
219 ou242 Tarsius_dianae 4.709530
220 ou243 Tarsius_pumilus 4.808111
221 ou244 Tarsius_spectrum 5.111988
222 ou245 Tarsius_syrichta 4.753590
223 ou246 Theropithecus_gelada 9.680344
224 ou247 Trachypithecus_auratus 9.181941
225 ou248 Trachypithecus_cristatus 8.872067
226 ou249 Trachypithecus_francoisi 9.008224
227 ou250 Trachypithecus_geei 9.031214
228 ou251 Trachypithecus_johnii 9.268609
229 ou252 Trachypithecus_obscurus 8.870663
230 ou253 Trachypithecus_phayrei 8.948976
231 ou254 Trachypithecus_pileatus 9.323669
232 ou255 Trachypithecus_vetulus 8.969542
233 ou256 Varecia_variegata 8.261010
href
1 http://ncbi.nlm.nih.gov/taxonomy/54135
2 http://ncbi.nlm.nih.gov/taxonomy/122248
3 http://ncbi.nlm.nih.gov/taxonomy/30590
4 http://ncbi.nlm.nih.gov/taxonomy/9502
5 <NA>
6 http://ncbi.nlm.nih.gov/taxonomy/182256
7 http://ncbi.nlm.nih.gov/taxonomy/30589
8 http://ncbi.nlm.nih.gov/taxonomy/182253
9 http://ncbi.nlm.nih.gov/taxonomy/121123
10 http://ncbi.nlm.nih.gov/taxonomy/9503
11 http://ncbi.nlm.nih.gov/taxonomy/30591
12 http://ncbi.nlm.nih.gov/taxonomy/361674
13 <NA>
14 http://ncbi.nlm.nih.gov/taxonomy/867331
15 http://ncbi.nlm.nih.gov/taxonomy/43147
16 <NA>
17 http://ncbi.nlm.nih.gov/taxonomy/37293
18 http://ncbi.nlm.nih.gov/taxonomy/57175
19 http://ncbi.nlm.nih.gov/taxonomy/9505
20 http://ncbi.nlm.nih.gov/taxonomy/57176
21 http://ncbi.nlm.nih.gov/taxonomy/300161
22 http://ncbi.nlm.nih.gov/taxonomy/261739
23 http://ncbi.nlm.nih.gov/taxonomy/9507
24 http://ncbi.nlm.nih.gov/taxonomy/118643
25 http://ncbi.nlm.nih.gov/taxonomy/9508
26 http://ncbi.nlm.nih.gov/taxonomy/9509
27 http://ncbi.nlm.nih.gov/taxonomy/1529884
28 http://ncbi.nlm.nih.gov/taxonomy/9510
29 http://ncbi.nlm.nih.gov/taxonomy/122246
30 http://ncbi.nlm.nih.gov/taxonomy/30594
31 http://ncbi.nlm.nih.gov/taxonomy/30596
32 http://ncbi.nlm.nih.gov/taxonomy/70825
33 http://ncbi.nlm.nih.gov/taxonomy/1812042
34 http://ncbi.nlm.nih.gov/taxonomy/867332
35 http://ncbi.nlm.nih.gov/taxonomy/1812037
36 http://ncbi.nlm.nih.gov/taxonomy/202457
37 http://ncbi.nlm.nih.gov/taxonomy/230833
38 http://ncbi.nlm.nih.gov/taxonomy/1290433
39 http://ncbi.nlm.nih.gov/taxonomy/78255
40 <NA>
41 http://ncbi.nlm.nih.gov/taxonomy/9523
42 <NA>
43 <NA>
44 http://ncbi.nlm.nih.gov/taxonomy/70814
45 http://ncbi.nlm.nih.gov/taxonomy/30592
46 http://ncbi.nlm.nih.gov/taxonomy/9495
47 http://ncbi.nlm.nih.gov/taxonomy/9482
48 http://ncbi.nlm.nih.gov/taxonomy/57375
49 http://ncbi.nlm.nih.gov/taxonomy/1346251
50 http://ncbi.nlm.nih.gov/taxonomy/52231
51 http://ncbi.nlm.nih.gov/taxonomy/52232
52 http://ncbi.nlm.nih.gov/taxonomy/9483
53 http://ncbi.nlm.nih.gov/taxonomy/867363
54 http://ncbi.nlm.nih.gov/taxonomy/57378
55 http://ncbi.nlm.nih.gov/taxonomy/9493
56 http://ncbi.nlm.nih.gov/taxonomy/9514
57 http://ncbi.nlm.nih.gov/taxonomy/9515
58 http://ncbi.nlm.nih.gov/taxonomy/9516
59 http://ncbi.nlm.nih.gov/taxonomy/37295
60 http://ncbi.nlm.nih.gov/taxonomy/255237
61 http://ncbi.nlm.nih.gov/taxonomy/9532
62 http://ncbi.nlm.nih.gov/taxonomy/9530
63 http://ncbi.nlm.nih.gov/taxonomy/36223
64 http://ncbi.nlm.nih.gov/taxonomy/303588
65 http://ncbi.nlm.nih.gov/taxonomy/9535
66 http://ncbi.nlm.nih.gov/taxonomy/36224
67 http://ncbi.nlm.nih.gov/taxonomy/1137048
68 http://ncbi.nlm.nih.gov/taxonomy/161496
69 http://ncbi.nlm.nih.gov/taxonomy/167130
70 http://ncbi.nlm.nih.gov/taxonomy/9536
71 http://ncbi.nlm.nih.gov/taxonomy/100224
72 http://ncbi.nlm.nih.gov/taxonomy/36225
73 http://ncbi.nlm.nih.gov/taxonomy/36226
74 http://ncbi.nlm.nih.gov/taxonomy/36227
75 http://ncbi.nlm.nih.gov/taxonomy/36228
76 http://ncbi.nlm.nih.gov/taxonomy/100487
77 http://ncbi.nlm.nih.gov/taxonomy/102108
78 http://ncbi.nlm.nih.gov/taxonomy/147649
79 http://ncbi.nlm.nih.gov/taxonomy/1579530
80 http://ncbi.nlm.nih.gov/taxonomy/147650
81 http://ncbi.nlm.nih.gov/taxonomy/263448
82 http://ncbi.nlm.nih.gov/taxonomy/47177
83 http://ncbi.nlm.nih.gov/taxonomy/9460
84 http://ncbi.nlm.nih.gov/taxonomy/198627
85 http://ncbi.nlm.nih.gov/taxonomy/9525
86 http://ncbi.nlm.nih.gov/taxonomy/9534
87 http://ncbi.nlm.nih.gov/taxonomy/54131
88 http://ncbi.nlm.nih.gov/taxonomy/33548
89 http://ncbi.nlm.nih.gov/taxonomy/9572
90 http://ncbi.nlm.nih.gov/taxonomy/517012
91 http://ncbi.nlm.nih.gov/taxonomy/31869
92 http://ncbi.nlm.nih.gov/taxonomy/9538
93 http://ncbi.nlm.nih.gov/taxonomy/13514
94 http://ncbi.nlm.nih.gov/taxonomy/13515
95 http://ncbi.nlm.nih.gov/taxonomy/30602
96 http://ncbi.nlm.nih.gov/taxonomy/34828
97 http://ncbi.nlm.nih.gov/taxonomy/34829
98 http://ncbi.nlm.nih.gov/taxonomy/261736
99 <NA>
100 http://ncbi.nlm.nih.gov/taxonomy/34830
101 http://ncbi.nlm.nih.gov/taxonomy/111173
102 http://ncbi.nlm.nih.gov/taxonomy/135486
103 http://ncbi.nlm.nih.gov/taxonomy/30609
104 http://ncbi.nlm.nih.gov/taxonomy/9465
105 http://ncbi.nlm.nih.gov/taxonomy/89672
106 http://ncbi.nlm.nih.gov/taxonomy/111174
107 http://ncbi.nlm.nih.gov/taxonomy/9593
108 http://ncbi.nlm.nih.gov/taxonomy/122222
109 http://ncbi.nlm.nih.gov/taxonomy/13557
110 http://ncbi.nlm.nih.gov/taxonomy/1328070
111 http://ncbi.nlm.nih.gov/taxonomy/9606
112 http://ncbi.nlm.nih.gov/taxonomy/9579
113 http://ncbi.nlm.nih.gov/taxonomy/29089
114 http://ncbi.nlm.nih.gov/taxonomy/61852
115 http://ncbi.nlm.nih.gov/taxonomy/61851
116 http://ncbi.nlm.nih.gov/taxonomy/9587
117 http://ncbi.nlm.nih.gov/taxonomy/9580
118 http://ncbi.nlm.nih.gov/taxonomy/61853
119 http://ncbi.nlm.nih.gov/taxonomy/81572
120 http://ncbi.nlm.nih.gov/taxonomy/9588
121 http://ncbi.nlm.nih.gov/taxonomy/9589
122 http://ncbi.nlm.nih.gov/taxonomy/9590
123 http://ncbi.nlm.nih.gov/taxonomy/34827
124 <NA>
125 http://ncbi.nlm.nih.gov/taxonomy/9519
126 http://ncbi.nlm.nih.gov/taxonomy/9447
127 <NA>
128 <NA>
129 http://ncbi.nlm.nih.gov/taxonomy/58710
130 http://ncbi.nlm.nih.gov/taxonomy/30588
131 http://ncbi.nlm.nih.gov/taxonomy/78583
132 http://ncbi.nlm.nih.gov/taxonomy/122230
133 http://ncbi.nlm.nih.gov/taxonomy/100475
134 http://ncbi.nlm.nih.gov/taxonomy/185457
135 http://ncbi.nlm.nih.gov/taxonomy/9453
136 http://ncbi.nlm.nih.gov/taxonomy/78866
137 http://ncbi.nlm.nih.gov/taxonomy/78584
138 http://ncbi.nlm.nih.gov/taxonomy/75567
139 http://ncbi.nlm.nih.gov/taxonomy/9468
140 http://ncbi.nlm.nih.gov/taxonomy/9540
141 http://ncbi.nlm.nih.gov/taxonomy/9551
142 http://ncbi.nlm.nih.gov/taxonomy/78449
143 http://ncbi.nlm.nih.gov/taxonomy/9541
144 http://ncbi.nlm.nih.gov/taxonomy/9542
145 http://ncbi.nlm.nih.gov/taxonomy/90383
146 http://ncbi.nlm.nih.gov/taxonomy/9544
147 http://ncbi.nlm.nih.gov/taxonomy/9545
148 http://ncbi.nlm.nih.gov/taxonomy/54600
149 http://ncbi.nlm.nih.gov/taxonomy/90385
150 http://ncbi.nlm.nih.gov/taxonomy/9548
151 http://ncbi.nlm.nih.gov/taxonomy/54601
152 http://ncbi.nlm.nih.gov/taxonomy/9552
153 http://ncbi.nlm.nih.gov/taxonomy/9546
154 http://ncbi.nlm.nih.gov/taxonomy/54602
155 http://ncbi.nlm.nih.gov/taxonomy/40843
156 http://ncbi.nlm.nih.gov/taxonomy/9568
157 http://ncbi.nlm.nih.gov/taxonomy/9561
158 http://ncbi.nlm.nih.gov/taxonomy/47180
159 http://ncbi.nlm.nih.gov/taxonomy/30608
160 http://ncbi.nlm.nih.gov/taxonomy/122232
161 http://ncbi.nlm.nih.gov/taxonomy/36231
162 http://ncbi.nlm.nih.gov/taxonomy/170207
163 http://ncbi.nlm.nih.gov/taxonomy/43780
164 http://ncbi.nlm.nih.gov/taxonomy/9470
165 http://ncbi.nlm.nih.gov/taxonomy/101278
166 http://ncbi.nlm.nih.gov/taxonomy/9463
167 http://ncbi.nlm.nih.gov/taxonomy/30611
168 http://ncbi.nlm.nih.gov/taxonomy/9597
169 http://ncbi.nlm.nih.gov/taxonomy/9598
170 http://ncbi.nlm.nih.gov/taxonomy/9557
171 http://ncbi.nlm.nih.gov/taxonomy/9472
172 http://ncbi.nlm.nih.gov/taxonomy/261734
173 <NA>
174 <NA>
175 http://ncbi.nlm.nih.gov/taxonomy/30598
176 http://ncbi.nlm.nih.gov/taxonomy/595220
177 http://ncbi.nlm.nih.gov/taxonomy/43777
178 http://ncbi.nlm.nih.gov/taxonomy/9600
179 http://ncbi.nlm.nih.gov/taxonomy/78452
180 http://ncbi.nlm.nih.gov/taxonomy/78453
181 http://ncbi.nlm.nih.gov/taxonomy/1046092
182 http://ncbi.nlm.nih.gov/taxonomy/1046093
183 http://ncbi.nlm.nih.gov/taxonomy/78451
184 http://ncbi.nlm.nih.gov/taxonomy/1046098
185 http://ncbi.nlm.nih.gov/taxonomy/1046101
186 http://ncbi.nlm.nih.gov/taxonomy/1046103
187 http://ncbi.nlm.nih.gov/taxonomy/164648
188 <NA>
189 <NA>
190 <NA>
191 http://ncbi.nlm.nih.gov/taxonomy/373033
192 http://ncbi.nlm.nih.gov/taxonomy/83281
193 http://ncbi.nlm.nih.gov/taxonomy/30601
194 http://ncbi.nlm.nih.gov/taxonomy/34825
195 http://ncbi.nlm.nih.gov/taxonomy/66062
196 http://ncbi.nlm.nih.gov/taxonomy/61621
197 http://ncbi.nlm.nih.gov/taxonomy/224329
198 http://ncbi.nlm.nih.gov/taxonomy/54133
199 http://ncbi.nlm.nih.gov/taxonomy/61622
200 http://ncbi.nlm.nih.gov/taxonomy/37588
201 http://ncbi.nlm.nih.gov/taxonomy/9487
202 http://ncbi.nlm.nih.gov/taxonomy/43778
203 http://ncbi.nlm.nih.gov/taxonomy/9491
204 http://ncbi.nlm.nih.gov/taxonomy/1079039
205 http://ncbi.nlm.nih.gov/taxonomy/78454
206 http://ncbi.nlm.nih.gov/taxonomy/290597
207 http://ncbi.nlm.nih.gov/taxonomy/30586
208 http://ncbi.nlm.nih.gov/taxonomy/9488
209 http://ncbi.nlm.nih.gov/taxonomy/9489
210 http://ncbi.nlm.nih.gov/taxonomy/9490
211 http://ncbi.nlm.nih.gov/taxonomy/122388
212 http://ncbi.nlm.nih.gov/taxonomy/27679
213 http://ncbi.nlm.nih.gov/taxonomy/70928
214 http://ncbi.nlm.nih.gov/taxonomy/9521
215 http://ncbi.nlm.nih.gov/taxonomy/66265
216 http://ncbi.nlm.nih.gov/taxonomy/1561161
217 http://ncbi.nlm.nih.gov/taxonomy/88029
218 http://ncbi.nlm.nih.gov/taxonomy/9477
219 http://ncbi.nlm.nih.gov/taxonomy/449501
220 <NA>
221 http://ncbi.nlm.nih.gov/taxonomy/662464
222 http://ncbi.nlm.nih.gov/taxonomy/1868482
223 http://ncbi.nlm.nih.gov/taxonomy/9565
224 http://ncbi.nlm.nih.gov/taxonomy/222416
225 http://ncbi.nlm.nih.gov/taxonomy/122765
226 http://ncbi.nlm.nih.gov/taxonomy/54180
227 http://ncbi.nlm.nih.gov/taxonomy/164650
228 http://ncbi.nlm.nih.gov/taxonomy/66063
229 http://ncbi.nlm.nih.gov/taxonomy/54181
230 http://ncbi.nlm.nih.gov/taxonomy/61618
231 http://ncbi.nlm.nih.gov/taxonomy/164651
232 http://ncbi.nlm.nih.gov/taxonomy/54137
233 http://ncbi.nlm.nih.gov/taxonomy/9455Because these are all from the same otus block anyway, we haven’t selected that column, but were it of interest it is also available in the taxa table.