TROM: Transcriptome Overlap Measure

A new bioinformatic tool for comparing transcriptomes of two biological samples from the same or different species. The mapping is conducted based on the overlap of the associated genes of different samples. More examples and detailed explanations are available in the vignette.

Version: 1.2
Depends: R (≥ 3.1.0), lattice, methods
Imports: AnnotationDbi, openxlsx, GO.db, gtools, RColorBrewer, gplots, topGO
Published: 2016-10-07
Author: Jingyi Jessica Li, Wei Vivian Li
Maintainer: Jingyi Jessica Li <jli at stat.ucla.edu>
License: GPL-2
URL: http://www.stat.ucla.edu/~jingyi.li/software-and-data/trom.html, http://www.stat.ucla.edu/~jingyi.li/packages/TROM/vignette.pdf
NeedsCompilation: no
CRAN checks: TROM results

Downloads:

Reference manual: TROM.pdf
Package source: TROM_1.2.tar.gz
Windows binaries: r-devel: TROM_1.2.zip, r-release: TROM_1.2.zip, r-oldrel: TROM_1.2.zip
OS X binaries: r-release: TROM_1.2.tgz, r-oldrel: not available
Old sources: TROM archive

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