This Systems Biology Package (Gelius-Dietrich et. al. (2012) <doi:10.1186/1752-0509-7-125>) implements algorithms for constraint based analyses of metabolic networks, e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis. The package is easily extendable for additional algorithms. Most of the current LP/MILP solvers are supported via additional packages.
| Version: | 2.0.4 |
| Depends: | R (≥ 2.14.2), Matrix, lattice |
| Imports: | methods |
| Suggests: | glpkAPI (≥ 1.2.8), cplexAPI (≥ 1.2.4), clpAPI (≥ 1.2.4), lpSolveAPI (≥ 5.5.2.0), parallel, grid |
| Published: | 2017-07-19 |
| Author: | C. Jonathan Fritzemeier [cre, ctb], Gabriel Gelius-Dietrich [aut], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb], Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb], Martin J. Lercher [ctb] |
| Maintainer: | C. Jonathan Fritzemeier <clausjonathan.fritzemeier at uni-duesseldorf.de> |
| License: | GPL-3 | file LICENSE |
| URL: | http://www.cs.hhu.de/lehrstuehle-und-arbeitsgruppen/computational-cell-biology/software/sybil.html |
| NeedsCompilation: | no |
| Citation: | sybil citation info |
| Materials: | README NEWS |
| CRAN checks: | sybil results |
| Reference manual: | sybil.pdf |
| Vignettes: |
sybil – Efficient Constrained Based Modelling in R |
| Package source: | sybil_2.0.4.tar.gz |
| Windows binaries: | r-devel: sybil_2.0.4.zip, r-release: sybil_2.0.4.zip, r-oldrel: sybil_2.0.4.zip |
| OS X binaries: | r-release: sybil_2.0.4.tgz, r-oldrel: sybil_2.0.0.tgz |
| Old sources: | sybil archive |
| Reverse depends: | BacArena, GlobalFit, metaboGSE, RSeed, sybilccFBA, sybilcycleFreeFlux, sybilDynFBA |
| Reverse imports: | exp2flux, g2f |
| Reverse suggests: | abcdeFBA, minval |
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