CRAN Package Check Results for Package SourceSet

Last updated on 2018-06-20 01:50:35 CEST.

Check Details

Version: 0.1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘r2cytoscape’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    Identifing all possible orderings..
    Total run time: 1.9 secs
    Identifing all possible orderings..
    Total run time: 1.99 secs
    Quitting from lines 346-347 (SourceSet.Rmd)
    Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘r2cytoscape’ ‘BiocStyle’ ‘graphite’ ‘hgu95av2.db’
Flavor: r-release-osx-x86_64

Version: 0.1.1
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘simPATHy’, ‘graphite’
Flavor: r-release-osx-x86_64

Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    Identifing all possible orderings..
    Total run time: 1.21 secs
    Identifing all possible orderings..
    Total run time: 0.86 secs
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshotf9064431846f.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshotf9064431846f.png': No such file or directory
    Quitting from lines 346-347 (SourceSet.Rmd)
    Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.1.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘r2cytoscape’ ‘BiocStyle’ ‘graphite’ ‘hgu95av2.db’ ‘org.Hs.eg.db’
Flavor: r-oldrel-osx-x86_64

Version: 0.1.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘graphite’
Flavor: r-oldrel-osx-x86_64

Version: 0.1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, cbind, colMeans, colSums, colnames, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect,
     is.unsorted, lapply, lengths, mapply, match, mget, order,
     paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
     rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
    Identifing all possible orderings..
    Total run time: 1.19 secs
    Identifing all possible orderings..
    Total run time: 1.22 secs
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshotc243394ccb72.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshotc243394ccb72.png': No such file or directory
    Quitting from lines 346-347 (SourceSet.Rmd)
    Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64