CRAN Package Check Results for Package clustree

Last updated on 2018-06-20 01:50:07 CEST.

Check Details

Version: 0.1.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘Seurat’
Flavor: r-patched-solaris-x86

Version: 0.1.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘Seurat’
Flavor: r-patched-solaris-x86

Version: 0.1.2
Check: for missing documentation entries
Result: ERROR
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘Seurat’
    Error in .requirePackage(package) :
     unable to find required package ‘Seurat’
    Calls: <Anonymous> ... withCallingHandlers -> is -> getClassDef -> .requirePackage
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.2
Check: data for non-ASCII characters
Result: NOTE
     Error in .requirePackage(package) :
     unable to find required package 'Seurat'
     Calls: <Anonymous> ... getClass -> getClassDef -> .classEnv -> .requirePackage
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [18s/18s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(clustree)
     Loading required package: ggraph
     Loading required package: ggplot2
     >
     > test_check("clustree")
     ── 1. Error: seurat interface works (@test-clustree.R#17) ─────────────────────
     unable to find required package 'Seurat'
     1: expect_is(clustree(sim_seurat), c("gg", "ggplot")) at testthat/test-clustree.R:17
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: clustree(sim_seurat)
     5: .extendsForS3(structure("seurat", package = "Seurat"))
     6: extends(Class, maybe = FALSE)
     7: getClassDef(class1)
     8: .requirePackage(package)
     9: stop(gettextf("unable to find required package %s", sQuote(package)), domain = NA)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 28 SKIPPED: 0 FAILED: 1
     1. Error: seurat interface works (@test-clustree.R#17)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 172-176 (clustree.Rmd)
    Error: processing vignette 'clustree.Rmd' failed with diagnostics:
    there is no package called 'Seurat'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘SingleCellExperiment’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘SingleCellExperiment’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.2
Check: for missing documentation entries
Result: ERROR
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘SingleCellExperiment’
    Error in .requirePackage(package) :
     unable to find required package ‘SingleCellExperiment’
    Calls: <Anonymous> ... withCallingHandlers -> is -> getClassDef -> .requirePackage
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.2
Check: data for non-ASCII characters
Result: NOTE
     Error in .requirePackage(package) :
     unable to find required package 'SingleCellExperiment'
     Calls: <Anonymous> ... getClass -> getClassDef -> .classEnv -> .requirePackage
     Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [19s/30s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: clustree(sim_sc3, prefix = "sc3_", suffix = "_clusters")
     5: .extendsForS3(structure("SingleCellExperiment", package = "SingleCellExperiment"))
     6: extends(Class, maybe = FALSE)
     7: getClassDef(class1)
     8: .requirePackage(package)
     9: stop(gettextf("unable to find required package %s", sQuote(package)), domain = NA)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 28 SKIPPED: 0 FAILED: 1
     1. Error: SingleCellExperiment interface works (@test-clustree.R#12)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 143-147 (clustree.Rmd)
    Error: processing vignette 'clustree.Rmd' failed with diagnostics:
    there is no package called 'SingleCellExperiment'
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [14s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: clustree(sim_sc3, prefix = "sc3_", suffix = "_clusters")
     5: .extendsForS3(structure("SingleCellExperiment", package = "SingleCellExperiment"))
     6: extends(Class, maybe = FALSE)
     7: getClassDef(class1)
     8: .requirePackage(package)
     9: stop(gettextf("unable to find required package %s", sQuote(package)), domain = NA)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 28 SKIPPED: 0 FAILED: 1
     1. Error: SingleCellExperiment interface works (@test-clustree.R#12)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64