Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.
| Version: | 0.1.1 |
| Depends: | R (≥ 2.10.0) |
| Imports: | DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, magrittr, dplyr, ggplot2, ggridges, tidyr, reshape2, purrr, grid, R.utils, AnnotationDbi, org.Hs.eg.db, clusterProfiler |
| Suggests: | knitr, rmarkdown, testthat, covr, dbplyr, igraph, readxl |
| Published: | 2018-03-17 |
| Author: | Mahmoud Ahmed [aut, cre] |
| Maintainer: | Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg> |
| BugReports: | https://github.com/MahShaaban/cRegulome/issues |
| License: | GPL-3 |
| URL: | https://github.com/MahShaaban/cRegulome |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | cRegulome results |
| Reference manual: | cRegulome.pdf |
| Vignettes: |
Case Study Using cRegulome |
| Package source: | cRegulome_0.1.1.tar.gz |
| Windows binaries: | r-devel: cRegulome_0.1.1.zip, r-release: cRegulome_0.1.1.zip, r-oldrel: cRegulome_0.1.1.zip |
| OS X binaries: | r-release: not available, r-oldrel: cRegulome_0.1.0.tgz |
| Old sources: | cRegulome archive |
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