Last updated on 2018-07-17 01:47:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 3.30 | 49.63 | 52.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 2.55 | 42.21 | 44.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 67.04 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 65.75 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.1.0 | 8.00 | 82.00 | 90.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 2.19 | 50.56 | 52.75 | OK | |
| r-patched-solaris-x86 | 1.1.0 | 81.20 | ERROR | |||
| r-release-linux-x86_64 | 1.1.0 | 2.93 | 50.08 | 53.01 | OK | |
| r-release-windows-ix86+x86_64 | 1.1.0 | 7.00 | 98.00 | 105.00 | OK | |
| r-release-osx-x86_64 | 1.1.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.0 | 5.00 | 96.00 | 101.00 | OK | |
| r-oldrel-osx-x86_64 | 1.1.0 | WARN |
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘SetRank-Ex.R’ failed
The error most likely occurred in:
> ### Name: buildSetCollection
> ### Title: Create a gene set collection
> ### Aliases: buildSetCollection
>
> ### ** Examples
>
> options(mc.cores=1)
> referenceSet = sprintf("gene_%02d", 1:50)
> geneSets = lapply(1:9, function(i) sample(referenceSet[((i-1)*5):((i+1)*5)], 5))
> annotationTable = data.frame(termID=sprintf("set_%02d", rep(1:9, each=5)),
+ geneID=unlist(geneSets),
+ termName = sprintf("dummy gene set %d", rep(1:9, each=5)),
+ dbName = "dummyDB",
+ description = "A dummy gene set DB for testing purposes")
> collection = buildSetCollection(annotationTable, referenceSet=referenceSet)
1 gene set DBs, 9 initial gene sets, 9 sets remaining and 50 genes in collection
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Error: processing vignette 'vignette.ltx' failed with diagnostics:
Running 'texi2dvi' on 'vignette.ltx' failed.
LaTeX errors:
! LaTeX Error: File `beramono.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.7 \usepackage
[T1]{fontenc}^^M
! ==> Fatal error occurred, no output PDF file produced!
Execution halted
Flavor: r-oldrel-osx-x86_64