CRAN Package Check Results for Package SetRank

Last updated on 2018-07-17 01:47:23 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 3.30 49.63 52.93 OK
r-devel-linux-x86_64-debian-gcc 1.1.0 2.55 42.21 44.76 OK
r-devel-linux-x86_64-fedora-clang 1.1.0 67.04 OK
r-devel-linux-x86_64-fedora-gcc 1.1.0 65.75 OK
r-devel-windows-ix86+x86_64 1.1.0 8.00 82.00 90.00 OK
r-patched-linux-x86_64 1.1.0 2.19 50.56 52.75 OK
r-patched-solaris-x86 1.1.0 81.20 ERROR
r-release-linux-x86_64 1.1.0 2.93 50.08 53.01 OK
r-release-windows-ix86+x86_64 1.1.0 7.00 98.00 105.00 OK
r-release-osx-x86_64 1.1.0 OK
r-oldrel-windows-ix86+x86_64 1.1.0 5.00 96.00 101.00 OK
r-oldrel-osx-x86_64 1.1.0 WARN

Check Details

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘SetRank-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: buildSetCollection
    > ### Title: Create a gene set collection
    > ### Aliases: buildSetCollection
    >
    > ### ** Examples
    >
    > options(mc.cores=1)
    > referenceSet = sprintf("gene_%02d", 1:50)
    > geneSets = lapply(1:9, function(i) sample(referenceSet[((i-1)*5):((i+1)*5)], 5))
    > annotationTable = data.frame(termID=sprintf("set_%02d", rep(1:9, each=5)),
    + geneID=unlist(geneSets),
    + termName = sprintf("dummy gene set %d", rep(1:9, each=5)),
    + dbName = "dummyDB",
    + description = "A dummy gene set DB for testing purposes")
    > collection = buildSetCollection(annotationTable, referenceSet=referenceSet)
    1 gene set DBs, 9 initial gene sets, 9 sets remaining and 50 genes in collection
    
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Error: processing vignette 'vignette.ltx' failed with diagnostics:
    Running 'texi2dvi' on 'vignette.ltx' failed.
    LaTeX errors:
    ! LaTeX Error: File `beramono.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.7 \usepackage
     [T1]{fontenc}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Execution halted
Flavor: r-oldrel-osx-x86_64