CRAN Package Check Results for Package genMOSSplus

Last updated on 2018-07-17 01:47:04 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 5.75 57.79 63.54 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 4.36 50.62 54.98 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 90.03 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 79.91 NOTE
r-patched-linux-x86_64 1.0 4.81 65.97 70.78 NOTE
r-patched-solaris-x86 1.0 100.30 NOTE
r-release-linux-x86_64 1.0 5.25 67.01 72.26 NOTE
r-release-osx-x86_64 1.0 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: R code for possible problems
Result: NOTE
    MOSS.GWAS: no visible global function definition for ‘complete.cases’
    MOSS.GWAS.main: no visible global function definition for ‘rbinom’
    MOSS.GWAS.main: no visible global function definition for ‘na.omit’
    MOSS.Hierarchical: no visible global function definition for
     ‘as.formula’
    MOSS.Hierarchical: no visible global function definition for ‘rbinom’
    call.mach: no visible global function definition for ‘read.table’
    call.mach: no visible global function definition for ‘write.table’
    call.mach.nohap: no visible global function definition for ‘read.table’
    call.mach.nohap: no visible global function definition for
     ‘write.table’
    clean.rsq.combine: no visible global function definition for
     ‘read.table’
    clean.rsq.combine: no visible global function definition for
     ‘write.table’
    cvFunc: no visible global function definition for ‘na.omit’
    ex2plink: no visible global function definition for ‘read.table’
    ex2plink: no visible global function definition for ‘write.table’
    extract.genos: no visible global function definition for ‘read.table’
    extract.genos: no visible global function definition for ‘write.table’
    fill.empties: no visible global function definition for ‘read.table’
    fill.empties: no visible global function definition for ‘write.table’
    findDualGenerators: no visible global function definition for ‘na.omit’
    findGenerators: no visible global function definition for ‘na.omit’
    findLogMargLik: no visible global function definition for ‘na.omit’
    findModel: no visible global function definition for ‘as.formula’
    findNeighbours: no visible global function definition for ‘na.omit’
    fitInteractionModels: no visible global function definition for
     ‘na.omit’
    fitInteractionModels: no visible global function definition for ‘glm’
    fitInteractionModels: no visible global function definition for
     ‘poisson’
    genos.clean: no visible global function definition for ‘read.table’
    genos.clean: no visible global function definition for ‘write.table’
    genos2numeric: no visible global function definition for ‘read.table’
    genos2numeric: no visible global function definition for ‘write.table’
    get.position: no visible global function definition for ‘read.table’
    get.position: no visible global function definition for ‘write.table’
    getSubsets: no visible global function definition for ‘na.omit’
    helper.rand.ints: no visible global function definition for ‘runif’
    logLaplace: no visible global function definition for ‘as.formula’
    logLaplace: no visible global function definition for ‘model.matrix’
    logLaplace: no visible global function definition for ‘glm’
    logLaplace: no visible global function definition for ‘poisson’
    machout2id: no visible global function definition for ‘read.table’
    machout2id: no visible global function definition for ‘write.table’
    machout2machin: no visible global function definition for ‘read.table’
    machout2machin: no visible global function definition for ‘write.table’
    pre1.plink2mach: no visible global function definition for ‘read.table’
    pre1.plink2mach: no visible global function definition for
     ‘write.table’
    pre2.remove.genos: no visible global function definition for
     ‘read.table’
    pre2.remove.genos: no visible global function definition for
     ‘write.table’
    pre4.combine.case.control: no visible global function definition for
     ‘read.table’
    pre4.combine.case.control: no visible global function definition for
     ‘write.table’
    pre5.genos2numeric: no visible global function definition for
     ‘read.table’
    pre5.genos2numeric: no visible global function definition for
     ‘write.table’
    pre6.merge.genos: no visible global function definition for
     ‘read.table’
    pre6.merge.genos: no visible global function definition for
     ‘write.table’
    pre7.add.conf.var: no visible global function definition for
     ‘read.table’
    pre7.add.conf.var: no visible global function definition for
     ‘write.table’
    pre7.add.conf.var.unix: no visible global function definition for
     ‘read.table’
    pre7.add.conf.var.unix: no visible global function definition for
     ‘write.table’
    pre8.split.train.test: no visible global function definition for
     ‘read.table’
    pre8.split.train.test: no visible global function definition for
     ‘write.table’
    prettyFormula: no visible global function definition for ‘na.omit’
    randomHierModel: no visible global function definition for ‘rbinom’
    run1.moss: no visible global function definition for ‘read.table’
    tune1.subsets: no visible global function definition for ‘read.table’
    tune1.subsets: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     as.formula complete.cases glm model.matrix na.omit poisson rbinom
     read.table runif write.table
    Consider adding
     importFrom("stats", "as.formula", "complete.cases", "glm",
     "model.matrix", "na.omit", "poisson", "rbinom", "runif")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: compiled code
Result: NOTE
    File ‘genMOSSplus/libs/genMOSSplus.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 5.7Mb
     sub-directories of 1Mb or more:
     exdata 5.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64