0.2.0

New

• Full support for Windows, Linux and macOS
• Full support for old R versions, only R-3.0.0 (April 2013) or later is needed (needed packages may have other dependencies)
• Function n_rsi to count cases where antibiotic test results were available, to be used in conjunction with dplyr::summarise, see ?rsi
• Function guess_bactid to determine the ID of a microorganism based on genus/species or known abbreviations like MRSA
• Function guess_atc to determine the ATC of an antibiotic based on name, trade name, or known abbreviations
• Function freq to create frequency tables, with additional info in a header
• Function MDRO to determine Multi Drug Resistant Organisms (MDRO) with support for country-specific guidelines.
• Suggest your own via https://github.com/msberends/AMR/issues/new
• Exceptional resistances defined by EUCAST are also supported instead of countries alone
• Functions BRMO and MRGN are wrappers for Dutch and German guidelines, respectively
• New algorithm to determine weighted isolates, can now be "points" or "keyantibiotics", see ?first_isolate
• New print format for tibbles and data.tables

Changed

• Fixed rsi class for vectors that contain only invalid antimicrobial interpretations
• Renamed dataset ablist to antibiotics
• Renamed dataset bactlist to microorganisms
• Added common abbreviations and trade names to the antibiotics dataset
• Added more microorganisms to the microorganisms dataset
• Added analysis examples on help page of dataset septic_patients
• Added support for character vector in join functions
• Added warnings when a join results in more rows after than before the join
• Altered %like% to make it case insensitive
• For parameters of functions first_isolate and EUCAST_rules column names are now case-insensitive
• Functions as.rsi and as.mic now add the package name and version as attributes

Other

• Expanded README.md with more examples
• Added ORCID of authors to DESCRIPTION file
• Added unit testing with the testthat package
• Added build tests for Linux and macOS using Travis CI (https://travis-ci.org/msberends/AMR)
• Added line coverage checking using CodeCov (https://codecov.io/gh/msberends/AMR/tree/master/R)

0.1.1

• EUCAST_rules applies for amoxicillin even if ampicillin is missing
• Edited column names to comply with GLIMS, the laboratory information system
• Added more valid MIC values
• Renamed ‘Daily Defined Dose’ to ‘Defined Daily Dose’
• Added barplots for rsi and mic classes

0.1.0

• First submission to CRAN.