[cre]MAGIC (Markov affinity-based graph imputation of cells) is a method for addressing technical noise in single-cell data, including under-sampling of mRNA molecules, often termed "dropout" which can severely obscure important gene-gene relationships. MAGIC shares information across similar cells, via data diffusion, to denoise the cell count matrix and fill in missing transcripts. Read more: van Dijk et al. (2018) <doi:10.1016/j.cell.2018.05.061>.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.3), Matrix (≥ 1.2-0) |
| Imports: | methods, stats, reticulate (≥ 1.4), ggplot2 |
| Suggests: | readr, viridis, phateR |
| Published: | 2018-07-10 |
| Author: | David van Dijk [aut],
Scott Gigante [cre] |
| Maintainer: | Scott Gigante <scott.gigante at yale.edu> |
| License: | GPL-2 | file LICENSE |
| NeedsCompilation: | no |
| Citation: | Rmagic citation info |
| Materials: | README |
| CRAN checks: | Rmagic results |
| Reference manual: | Rmagic.pdf |
| Package source: | Rmagic_1.0.0.tar.gz |
| Windows binaries: | r-devel: Rmagic_1.0.0.zip, r-release: Rmagic_1.0.0.zip, r-oldrel: Rmagic_1.0.0.zip |
| OS X binaries: | r-release: Rmagic_1.0.0.tgz, r-oldrel: Rmagic_1.0.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=Rmagic to link to this page.