eggCounts: Hierarchical Modelling of Faecal Egg Counts

An implementation of Bayesian hierarchical models for faecal egg count data to assess anthelmintic efficacy. Bayesian inference is done via MCMC sampling using Stan.

Version: 2.0
Depends: R (≥ 3.2.0), Rcpp (≥ 0.12.0), rstan (≥ 2.16.1), methods
Imports: boot, coda, utils, testthat, numbers, lattice, rootSolve
LinkingTo: StanHeaders (≥ 2.16.0), rstan (≥ 2.16.1), BH (≥ 1.62), Rcpp (≥ 0.12.0), RcppEigen (≥
Suggests: R.rsp, eggCountsExtra
Published: 2018-05-02
Author: Craig Wang [aut, cre] (0000-0003-1804-2463), Michaela Paul [aut], Tea Isler [ctb], Reinhard Furrer [ctb] (0000-0002-6319-2332), Trustees of Columbia University [cph]
Maintainer: Craig Wang < at>
License: GPL (≥ 3)
NeedsCompilation: yes
SystemRequirements: Stan (
Citation: eggCounts citation info
Materials: NEWS
CRAN checks: eggCounts results


Reference manual: eggCounts.pdf
Vignettes: eggCounts: a Bayesian hierarchical toolkit to model faecal egg count reductions
Package source: eggCounts_2.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: eggCounts_2.0.tgz, r-oldrel: eggCounts_2.0.tgz
Old sources: eggCounts archive


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