An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons. See nat.examples and frulhns for sample code.
nat is a cleaned up version of code that has been used in a number of papers from our group including:
For the impatient …
# install install.packages("nat") # use library(nat) # plot some test data (?kcs20 for details) # Drosophila Kenyon cells processed from raw data at http://flycircuit.tw head(kcs20) open3d() plot3d(kcs20, col=type) # get help ?nat
A confirmed stable version of nat can be installed from CRAN.
However, nat remains under quite active development, so we generally recommend installing the latest development version directly from github using the devtools package.
# install devtools if required if (!requireNamespace("devtools")) install.packages("devtools") # then install nat devtools::install_github("jefferis/nat")
If you want some help using nat, then please use the following resources
If you think that you have found a bug
Thanks for your interest in nat!