This Systems Biology Library for R implements algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis). Most of the current LP/MILP solvers are supported via additional packages.
Version: | 2.1.1 |
Depends: | R (≥ 3.2.0), Matrix, lattice |
Imports: | methods |
Suggests: | glpkAPI (≥ 1.2.8), cplexAPI (≥ 1.2.4), clpAPI (≥ 1.2.4), lpSolveAPI (≥ 5.5.2.0), parallel, grid |
Published: | 2018-05-14 |
Author: | C. Jonathan Fritzemeier [cre, ctb], Gabriel Gelius-Dietrich [aut], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb], Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb], Martin J. Lercher [ctb] |
Maintainer: | C. Jonathan Fritzemeier <clausjonathan.fritzemeier at uni-duesseldorf.de> |
License: | GPL-3 | file LICENSE |
URL: | http://www.cs.hhu.de/en/research-groups/bioinformatics/software/sybil.html |
NeedsCompilation: | no |
Citation: | sybil citation info |
Materials: | README NEWS |
CRAN checks: | sybil results |
Reference manual: | sybil.pdf |
Vignettes: |
sybil – Efficient Constrained Based Modelling in R |
Package source: | sybil_2.1.1.tar.gz |
Windows binaries: | r-devel: sybil_2.1.1.zip, r-release: sybil_2.1.1.zip, r-oldrel: sybil_2.1.1.zip |
OS X binaries: | r-release: sybil_2.0.4.tgz, r-oldrel: sybil_2.0.0.tgz |
Old sources: | sybil archive |
Reverse depends: | BacArena, GlobalFit, metaboGSE, RSeed, sybilccFBA, sybilcycleFreeFlux, sybilDynFBA |
Reverse imports: | exp2flux, g2f |
Reverse suggests: | abcdeFBA, minval |
Please use the canonical form https://CRAN.R-project.org/package=sybil to link to this page.