treespace: Statistical Exploration of Landscapes of Phylogenetic Trees

Tools for the exploration of distributions of phylogenetic trees. This package includes a 'shiny' interface which can be started from R using treespaceServer(). For further details see Jombart et al. (2017) <doi:10.1111/1755-0998.12676>.

Version: 1.1.3
Depends: R (≥ 3.4.0), ape, ade4
Imports: adegenet, adegraphics, adephylo, combinat, compiler, distory, fields, htmlwidgets, MASS, parallel, phangorn, phytools, Rcpp, rgl, RLumShiny, scatterD3, shiny, shinyBS, utils
LinkingTo: Rcpp
Suggests: ggplot2, igraph, knitr, pander, RColorBrewer, reshape2, rmarkdown, testthat
Published: 2018-05-14
Author: Thibaut Jombart [aut], Michelle Kendall [aut, cre], Jacob Almagro-Garcia [aut], Caroline Colijn [aut]
Maintainer: Michelle Kendall <michelle.kendall at>
License: MIT + file LICENSE
NeedsCompilation: yes
Citation: treespace citation info
Materials: README
CRAN checks: treespace results


Reference manual: treespace.pdf
Vignettes: treespace worked example: Dengue trees
treespace worked example: Transmission trees
treespace: exploration of landscapes of phylogenetic trees
treespace worked example: comparing by tip categories
Package source: treespace_1.1.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: treespace_1.1.3.tgz, r-oldrel: treespace_1.1.3.tgz
Old sources: treespace archive


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