The distributions of the weight of evidence (log Bayes factor) favouring case over noncase status in a test dataset (or test folds generated by cross-validation) can be used to quantify the performance of a diagnostic test (McKeigue P., Quantifying performance of a diagnostic test as the expected information for discrimination: relation to the C-statistic. Statistical Methods for Medical Research 2018, in press). The package can be used with any test dataset on which you have observed case-control status and have computed prior and posterior probabilities of case status using a model learned on a training dataset. To quantify how the predictor will behave as a risk stratifier, the quantiles of the distributions of weight of evidence in cases and controls can be calculated and plotted.
Version: | 0.4.2 |
Depends: | R (≥ 2.10) |
Imports: | ggplot2, pROC, reshape2, zoo |
Published: | 2018-06-15 |
Author: | Paul McKeigue [aut], Marco Colombo [ctb, cre] |
Maintainer: | Marco Colombo <m.colombo at ed.ac.uk> |
License: | GPL-3 |
URL: | http://www.homepages.ed.ac.uk/pmckeigu/preprints/classify/wevidtutorial.html |
NeedsCompilation: | no |
CRAN checks: | wevid results |
Reference manual: | wevid.pdf |
Package source: | wevid_0.4.2.tar.gz |
Windows binaries: | r-devel: wevid_0.4.2.zip, r-release: wevid_0.4.2.zip, r-oldrel: wevid_0.4.2.zip |
OS X binaries: | r-release: wevid_0.4.2.tgz, r-oldrel: wevid_0.4.2.tgz |
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