CRAN Package Check Results for Package archetypes

Last updated on 2018-09-26 01:46:16 CEST.

Check Details

Version: 2.2-0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘MASS’ ‘TSP’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.2-0
Check: R code for possible problems
Result: NOTE
    archetypes: no visible binding for global variable ‘history’
    archmap: no visible global function definition for ‘chull’
    archmap: no visible global function definition for ‘plot’
    archmap: no visible global function definition for ‘points’
    archmap: no visible global function definition for ‘polygon’
    archmap: no visible global function definition for ‘text’
    atypes_projection: no visible global function definition for ‘cmdscale’
    atypes_projection: no visible global function definition for ‘dist’
    barplot.archetypes : .below.default: no visible global function
     definition for ‘layout’
    barplot.archetypes : .below.compressed: no visible global function
     definition for ‘layout’
    barplot.archetypes : .below.compressed: no visible global function
     definition for ‘par’
    barplot.archetypes : .below.compressed: no visible global function
     definition for ‘mtext’
    barplot.archetypes : .below.compressed: no visible global function
     definition for ‘text’
    barplot.archetypes : .perc: no visible global function definition for
     ‘ecdf’
    barplot.archetypes: no visible global function definition for ‘par’
    bisquare0.reweightsfn: no visible global function definition for
     ‘median’
    ginv.zalphasfn: no visible global function definition for ‘ginv’
    jd: no visible global function definition for ‘gray’
    jd : annotation1: no visible global function definition for ‘arrows’
    jd : annotation2: no visible global function definition for ‘lines’
    jd : annotation2: no visible global function definition for ‘arrows’
    lines.pcplot: no visible global function definition for ‘matlines’
    movieplot: no visible global function definition for ‘gray’
    movieplot: no visible global function definition for ‘plot’
    movieplot: no visible global function definition for ‘points’
    movieplot2: no visible global function definition for ‘rgb’
    movieplot2: no visible global function definition for ‘points’
    movieplot2: no visible global function definition for ‘par’
    opt.zalphasfn: no visible global function definition for ‘rnorm’
    opt.zalphasfn: no visible global function definition for ‘optim’
    panorama.archetypes: no visible global function definition for ‘par’
    panorama.archetypes: no visible global function definition for ‘layout’
    panorama.archetypes: no visible global function definition for ‘plot’
    panorama.archetypes: no visible global function definition for ‘tail’
    panorama.archetypes: no visible global function definition for ‘points’
    panorama.archetypes: no visible global function definition for ‘mtext’
    pcplot.archetypes: no visible global function definition for ‘gray’
    pcplot.default: no visible global function definition for ‘gray’
    pcplot.default: no visible global function definition for ‘matplot’
    pcplot.default: no visible global function definition for ‘axis’
    pcplot.default: no visible global function definition for ‘lines’
    pcplot.default: no visible global function definition for ‘text’
    screeplot.stepArchetypes: no visible global function definition for
     ‘plot’
    screeplot.stepArchetypes: no visible global function definition for
     ‘axis’
    simplexplot: no visible global function definition for ‘combn’
    simplexplot: no visible global function definition for ‘plot’
    simplexplot: no visible global function definition for ‘symbols’
    simplexplot: no visible global function definition for ‘lines’
    simplexplot: no visible global function definition for ‘text’
    simplexplot: no visible global function definition for ‘points’
    skeletonplot : one.skeleton: no visible global function definition for
     ‘lines’
    skeletonplot : one.skeleton: no visible global function definition for
     ‘symbols’
    skeletonplot: no visible global function definition for ‘plot’
    skeletonplot: no visible global function definition for ‘axis’
    skeletonplot: no visible global function definition for ‘box’
    skeletonplot: no visible global function definition for ‘abline’
    std.scalefn: no visible binding for global variable ‘sd’
    tspsimplex_projection: no visible global function definition for ‘dist’
    tspsimplex_projection: no visible global function definition for
     ‘solve_TSP’
    tspsimplex_projection: no visible global function definition for ‘TSP’
    tspsimplex_projection: no visible global function definition for ‘tail’
    tspsimplex_projection: no visible global function definition for ‘head’
    xyplot.archetypes: no visible global function definition for ‘gray’
    xyplot.archetypes: no visible global function definition for ‘plot’
    xyplot.archetypes: no visible global function definition for ‘points’
    xyplot.archetypes: no visible global function definition for ‘lines’
    xyplot.stepArchetypes: no visible global function definition for ‘gray’
    xyplot.stepArchetypes: no visible global function definition for ‘plot’
    xyplot.stepArchetypes: no visible global function definition for
     ‘points’
    xyplot.stepArchetypes: no visible global function definition for
     ‘lines’
    xyplot.weightedArchetypes: no visible binding for global variable
     ‘gray’
    Undefined global functions or variables:
     TSP abline arrows axis box chull cmdscale combn dist ecdf ginv gray
     head history layout lines matlines matplot median mtext optim par
     plot points polygon rgb rnorm sd solve_TSP symbols tail text
    Consider adding
     importFrom("grDevices", "chull", "gray", "rgb")
     importFrom("graphics", "abline", "arrows", "axis", "box", "layout",
     "lines", "matlines", "matplot", "mtext", "par", "plot",
     "points", "polygon", "symbols", "text")
     importFrom("stats", "cmdscale", "dist", "ecdf", "median", "optim",
     "rnorm", "sd")
     importFrom("utils", "combn", "head", "history", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.2-0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in method(..., k = k[i]) : k=13: zs > maxKappa
    Warning in method(..., k = k[i]) : k=13: zs > maxKappa
    Warning in method(..., k = k[i]) : k=13: zs > maxKappa
    Warning in method(..., k = k[i]) : k=14: zs > maxKappa
    Warning in method(..., k = k[i]) : k=14: zs > maxKappa
    Warning in method(..., k = k[i]) : k=14: zs > maxKappa
    Warning in method(..., k = k[i]) : k=15: zs > maxKappa
    Warning in axis(1, at = a, ...) : "axes" is not a graphical parameter
    Loading required package: grid
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'archetypes.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `enumitem.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.4 \usepackage
     {amsmath}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64