Last updated on 2018-09-26 01:46:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.3 | 233.77 | 157.09 | 390.86 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.3 | 211.92 | 124.08 | 336.00 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.3 | 510.15 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.3 | 481.35 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.0.3 | 442.00 | 297.00 | 739.00 | NOTE | |
| r-patched-linux-x86_64 | 0.0.3 | 236.35 | 149.54 | 385.89 | OK | |
| r-patched-solaris-x86 | 0.0.3 | 443.40 | ERROR | |||
| r-release-linux-x86_64 | 0.0.3 | 232.38 | 149.61 | 381.99 | OK | |
| r-release-windows-ix86+x86_64 | 0.0.3 | 436.00 | 340.00 | 776.00 | NOTE | |
| r-release-osx-x86_64 | 0.0.3 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.0.3 | 333.00 | 298.00 | 631.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.0.3 | NOTE |
Version: 0.0.3
Check: installed package size
Result: NOTE
installed size is 53.7Mb
sub-directories of 1Mb or more:
libs 52.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(trialr)
Loading required package: Rcpp
>
> test_check("trialr")
SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 1).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 500 [ 0%] (Warmup)
Iteration: 50 / 500 [ 10%] (Warmup)
Iteration: 100 / 500 [ 20%] (Warmup)
Iteration: 150 / 500 [ 30%] (Warmup)
Iteration: 200 / 500 [ 40%] (Warmup)
Iteration: 250 / 500 [ 50%] (Warmup)
Iteration: 251 / 500 [ 50%] (Sampling)
Iteration: 300 / 500 [ 60%] (Sampling)
Iteration: 350 / 500 [ 70%] (Sampling)
Iteration: 400 / 500 [ 80%] (Sampling)
Iteration: 450 / 500 [ 90%] (Sampling)
Iteration: 500 / 500 [100%] (Sampling)
Elapsed Time: 0.02 seconds (Warm-up)
0.01 seconds (Sampling)
0.03 seconds (Total)
SAMPLING FOR MODEL 'CrmEmpiricNormalPrior' NOW (CHAIN 2).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 500 [ 0%] (Warmup)
Iteration: 50 / 500 [ 10%] (Warmup)
Iteration: 100 / 500 [ 20%] (Warmup)
Iteration: 150 / 500 [ 30%] (Warmup)
Iteration: 200 / 500 [ 40%] (Warmup)
Iteration: 250 / 500 [ 50%] (Warmup)
Iteration: 251 / 500 [ 50%] (Sampling)
Iteration: 300 / 500 [ 60%] (Sampling)
Iteration: 350 / 500 [ 70%] (Sampling)
Iteration: 400 / 500 [ 80%] (Sampling)
Iteration: 450 / 500 [ 90%] (Sampling)
Iteration: 500 / 500 [100%] (Sampling)
Elapsed Time: 0.02 seconds (Warm-up)
0.01 seconds (Sampling)
0.03 seconds (Total)
SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 1).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.06 seconds (Warm-up)
0.05 seconds (Sampling)
0.11 seconds (Total)
SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 2).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.06 seconds (Warm-up)
0.06 seconds (Sampling)
0.12 seconds (Total)
SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 3).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.06 seconds (Warm-up)
0.05 seconds (Sampling)
0.11 seconds (Total)
SAMPLING FOR MODEL 'CrmOneParamLogisticNormalPrior' NOW (CHAIN 4).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.05 seconds (Warm-up)
0.07 seconds (Sampling)
0.12 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 500 [ 0%] (Warmup)
Iteration: 50 / 500 [ 10%] (Warmup)
Iteration: 100 / 500 [ 20%] (Warmup)
Iteration: 150 / 500 [ 30%] (Warmup)
Iteration: 200 / 500 [ 40%] (Warmup)
Iteration: 250 / 500 [ 50%] (Warmup)
Iteration: 251 / 500 [ 50%] (Sampling)
Iteration: 300 / 500 [ 60%] (Sampling)
Iteration: 350 / 500 [ 70%] (Sampling)
Iteration: 400 / 500 [ 80%] (Sampling)
Iteration: 450 / 500 [ 90%] (Sampling)
Iteration: 500 / 500 [100%] (Sampling)
Elapsed Time: 0.17 seconds (Warm-up)
0.09 seconds (Sampling)
0.26 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 500 [ 0%] (Warmup)
Iteration: 50 / 500 [ 10%] (Warmup)
Iteration: 100 / 500 [ 20%] (Warmup)
Iteration: 150 / 500 [ 30%] (Warmup)
Iteration: 200 / 500 [ 40%] (Warmup)
Iteration: 250 / 500 [ 50%] (Warmup)
Iteration: 251 / 500 [ 50%] (Sampling)
Iteration: 300 / 500 [ 60%] (Sampling)
Iteration: 350 / 500 [ 70%] (Sampling)
Iteration: 400 / 500 [ 80%] (Sampling)
Iteration: 450 / 500 [ 90%] (Sampling)
Iteration: 500 / 500 [100%] (Sampling)
Elapsed Time: 0.17 seconds (Warm-up)
0.07 seconds (Sampling)
0.24 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.4 seconds (Warm-up)
0.31 seconds (Sampling)
0.71 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.43 seconds (Warm-up)
0.31 seconds (Sampling)
0.74 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.42 seconds (Warm-up)
0.31 seconds (Sampling)
0.73 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.45 seconds (Warm-up)
0.26 seconds (Sampling)
0.71 seconds (Total)
── 1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_st
all(abs(mod$utility - c(-0.91, -0.47, 0.42, 0.64, 0.64)) < epsilon) isn't true.
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 1).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.41 seconds (Warm-up)
0.28 seconds (Sampling)
0.69 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 2).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.38 seconds (Warm-up)
0.29 seconds (Sampling)
0.67 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 3).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.38 seconds (Warm-up)
0.29 seconds (Sampling)
0.67 seconds (Total)
SAMPLING FOR MODEL 'EffTox' NOW (CHAIN 4).
Gradient evaluation took 0 seconds
1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
Adjust your expectations accordingly!
Iteration: 1 / 2000 [ 0%] (Warmup)
Iteration: 200 / 2000 [ 10%] (Warmup)
Iteration: 400 / 2000 [ 20%] (Warmup)
Iteration: 600 / 2000 [ 30%] (Warmup)
Iteration: 800 / 2000 [ 40%] (Warmup)
Iteration: 1000 / 2000 [ 50%] (Warmup)
Iteration: 1001 / 2000 [ 50%] (Sampling)
Iteration: 1200 / 2000 [ 60%] (Sampling)
Iteration: 1400 / 2000 [ 70%] (Sampling)
Iteration: 1600 / 2000 [ 80%] (Sampling)
Iteration: 1800 / 2000 [ 90%] (Sampling)
Iteration: 2000 / 2000 [100%] (Sampling)
Elapsed Time: 0.4 seconds (Warm-up)
0.28 seconds (Sampling)
0.68 seconds (Total)
══ testthat results ═══════════════════════════════════════════════════════════
OK: 180 SKIPPED: 0 FAILED: 1
1. Failure: Thall et al. (2014) model fits correctly to "1NNN 2ENN" (@test_stan_efftox.R#44)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86