Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (see <http://www.maxquant.org>). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
| Version: | 0.92.3 |
| Depends: | R (≥ 3.0.0) |
| Imports: | data.table, ggplot2 (≥ 2.2), ggdendro, graphics, grid, gridExtra, grDevices, gtable, kableExtra, knitr (≥ 1.10), methods, plyr, proto, RColorBrewer, reshape2, rmarkdown, seqinr, stats, utils, yaml |
| Suggests: | testthat |
| Published: | 2018-02-07 |
| Author: | Chris Bielow |
| Maintainer: | Chris Bielow <chris.bielow at fu-berlin.de> |
| BugReports: | https://github.com/cbielow/PTXQC/issues |
| License: | GPL-2 |
| URL: | https://github.com/cbielow/PTXQC |
| NeedsCompilation: | no |
| SystemRequirements: | pandoc (http://pandoc.org) for building Vignettes and output reports as HTML |
| Citation: | PTXQC citation info |
| Materials: | README NEWS |
| CRAN checks: | PTXQC results |
| Reference manual: | PTXQC.pdf |
| Vignettes: |
Basic R-Usage Guide for PTXQC Customizing PTXQC reports Drag'n'drop Usage Guide for PTXQC Frequently asked questions for PTXQC Input/Output data for PTXQC List of Metrics |
| Package source: | PTXQC_0.92.3.tar.gz |
| Windows binaries: | r-devel: PTXQC_0.92.3.zip, r-release: PTXQC_0.92.3.zip, r-oldrel: PTXQC_0.92.3.zip |
| OS X binaries: | r-release: PTXQC_0.92.3.tgz, r-oldrel: PTXQC_0.91.0.tgz |
| Old sources: | PTXQC archive |
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