RNeXML: Semantically Rich I/O for the 'NeXML' Format

Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.

Version: 2.1.2
Depends: R (≥ 3.0.0), ape (≥ 3.1), methods (≥ 3.0.0)
Imports: XML (≥ 3.95), plyr (≥ 1.8), reshape2 (≥ 1.2.2), httr (≥ 0.3), uuid (≥ 0.1-1), dplyr (≥ 0.5.0), lazyeval (≥ 0.1.0), tidyr (≥ 0.3.1), stringr (≥ 1.0), xml2
Suggests: spelling, rdflib, geiger (≥ 2.0), phytools (≥ 0.3.93), knitr (≥ 1.5), rfigshare (≥ 0.3.0), knitcitations (≥ 1.0.1), testthat (≥ 0.10.0), phylobase (≥ 0.6.8), rmarkdown (≥ 0.3.3), xslt, taxize (≥ 0.2.2), covr
Published: 2018-08-13
Author: Carl Boettiger ORCID iD [cre, aut], Scott Chamberlain ORCID iD [aut], Hilmar Lapp ORCID iD [aut], Kseniia Shumelchyk [aut], Rutger Vos ORCID iD [aut]
Maintainer: Carl Boettiger <cboettig at gmail.com>
BugReports: https://github.com/ropensci/RNeXML/issues
License: BSD_3_clause + file LICENSE
URL: https://github.com/ropensci/RNeXML
NeedsCompilation: no
Language: en-US
Citation: RNeXML citation info
Materials: README NEWS
In views: Phylogenetics
CRAN checks: RNeXML results


Reference manual: RNeXML.pdf
Vignettes: The nexml S4 Object
Handling Metadata in RNeXML
Extending NeXML to simmap
Package source: RNeXML_2.1.2.tar.gz
Windows binaries: r-devel: RNeXML_2.1.2.zip, r-release: RNeXML_2.1.2.zip, r-oldrel: RNeXML_2.1.2.zip
OS X binaries: r-release: RNeXML_2.1.2.tgz, r-oldrel: RNeXML_2.1.2.tgz
Old sources: RNeXML archive

Reverse dependencies:

Reverse imports: phylobase
Reverse suggests: rotl


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