Sound generation with soundgen

Andrey Anikin


1 Intro

1.1 Purpose

The function soundgen is intended for the synthesis of animal vocalizations, including human non-linguistic vocalizations like sighs, moans, screams, etc. It can also create non-biological sounds that require precise control over spectral and temporal modulations, such as special sound effects in computer games or acoustic stimuli for scientific experiments. Soundgen is NOT meant to be used for text-to-speech conversion. It can be adapted for this purpose, but existing specialized tools will probably serve better.

Soundgen uses a parametric algorithm, which means that sounds are synthesized de novo, and the output is completely determined by the values of control parameters, as opposed to concatenating or modifying existing audio recordings. Under the hood, the current version of soundgen generates and filters two sources of excitation: sine waves and white noise.

The rest of this vignette will unpack this last statement and demonstrate how soundgen can be used in practice. To simplify setting the control parameters and visualizing the output, soundgen library includes an interactive Shiny app. To start the app, type soundgen_app() from R or try it online at To generate sounds from the console, use the function soundgen. Each section of the vignette focuses on a particular aspect of sound generation, both describing the relevant arguments of soundgen and explaining how they can be set in the Shiny app. Note that some advanced features, notably vectorization of several arguments, are not implemented in the app and are only accessible from the console.

TIP: this vignette is a hands-on, non-technical tutorial focusing on how to use soundgen in order to synthesize new sounds. For a more rigorous and theoretical discussion, please refer to Anikin, A. (2018). Soundgen: an open-source tool for synthesizing nonverbal vocalizations. Behavoir Research Methods, 1-15.

1.2 Before you proceed: consider the alternatives

There are several other R packages that offer sound synthesis, notably tuneR, seewave, and phonTools. Both seewave and tuneR implement straightforward ways to synthesize pulses and square, triangular, or sine waves as well as noise with adjustable (linear) spectral slope. You can also create multiple harmonics with both amplitude and frequency modulation using seewave::synth() and seewave::synth2(). There is even a function available for adding formants and thus creating different vowels: phonTools::vowelsynth(). Basic tonal synthesis and many acoustic manipulations can also be performed using the open-source program PRAAT. If this is ample for your needs, you might want to try these alternatives first.

So why bother with soundgen? First, it takes customization and flexibility of sound synthesis much further. You will appreciate this flexibility if your aim is to produce convincing biological sounds. And second, it’s a higher-level tool with dedicated subroutines for things like controlling the rolloff (relative energy of different harmonics), adding moving formants and antiformants, mixing harmonic and noise components, controlling voice changes over multiple syllables, adding stochasticity to imitate unpredictable voice changes common in biological sound production, and more. In other words, soundgen offers powerful control over low-level acoustic characteristics of synthesized sounds with the benefit of also offering transparent, meaningful high-level parameters intended for rapid and straightforward specification of whole bouts of vocalizing.

Because of this high-level control, you don’t really have to think about the math of sound synthesis in order to use soundgen (although if you do, that helps). This vignette also assumes that the reader has some training in phonetics or bioacoustics, particularly for sections on formants and subharmonics.

1.3 Basic principles of sound synthesis in soundgen

Feel free to skip this section if you are only interested in using soundgen, not in how it works under the hood.

Soundgen’s credo is to start with a few control parameters (e.g., the intonation contour, the amount of noise, the number of syllables and their duration, etc.) and to generate a corresponding audio stream, which will sound like a biological vocalization (a bark, a laugh, etc). The core algorithm for generating a single voiced segment implements the standard source-filter model (Fant, 1971). The voiced component is generated as a sum of sine waves and the noise component as filtered white noise, and both components are then passed through a frequency filter simulating the effect of human vocal tract. This process can be conceptually divided into three stages:

  1. Generation of the harmonic component (glottal source). At this crucial stage, we “paint” the spectrogram of the glottal source based on the desired intonation contour and spectral envelope by specifying the frequencies, phases, and amplitudes of a number of sine waves, one for each harmonic of the fundamental frequency (f0). If needed, we also add stochastic and non-linear effects at this stage: jitter and shimmer (random fluctuation in frequency and amplitude), subharmonics, slower random drift of control parameters, etc. Once the spectrogram “painting” is complete, we synthesize the corresponding waveform by generating and adding up as many sine waves as there are harmonics in the spectrum.

Note that soundgen currently implements only sine wave synthesis of voiced fragments. This is different from modeling glottal cycles themselves, as in phonetic models and some popular text-to-speech engines (e.g. Klatt, 1980). Normally multiple glottal cycles are generated simultaneously, with no pauses in between them (no closed phase) and with a continuously changing f0. It is also possible to add a closed phase, in which case each glottal cycle is generated separately, with f0 held stable within each cycle. In future versions of soundgen there may be an option to use a particular parametric model of the glottal cycle as excitation source as an alternative to generating a separate sine wave for each harmonic.

  1. Generation of the turbulent noise component (aspiration, hissing, etc.). In addition to harmonic oscillations of the vocal cords, there are other sources of excitation, notably turbulent noise. For example, aspiration noise may be synthesized as white noise with rolloff -6 dB/octave (Klatt, 1990) and added to the glottal source before formant filtering. It is similarly straightforward to add other types of noise, which may originate higher up in the vocal tract and thus display a different formant structure from the glottal source (e.g., high-frequency hissing, broadband clicks for tongue smacking, etc.)

Some form of noise is synthesized in most sound generators. In soundgen noise is created in the frequency domain (i.e., as a spectrogram) and then converted into a time series via inverse FFT. Noise is generated with a flat spectrum up to a certain threshold, followed by user-specified linear rolloff (Johnson, 2012).

  1. Spectral filtering (formants and lip radiation). The vocal tract acts as a resonator that modifies the source spectrum by amplifying certain frequencies and dampening others. In speech, time-varying resonance frequencies (formants) are responsible for the distinctions between different vowels, but formants are also ubiquitous in animal vocalizations. Just as we “painted” a spectrogram for the acoustic source in (1), we now “paint” a spectral filter with a specified number of stationary or moving formants. We then take a short-time Fourier transform (STFT) of the generated waveform to convert it back to a spectrogram, multiply the latter by our filter, and then take an inverse STFT to go back to the time domain. This filtering can be applied to harmonic and noise components separately or - for noise sources close to the glottis - the harmonic component and the noise component can be added first and then filtered together.

Note that this STFT-mediated method of adding formants is different from the more traditional convolution, but with multiple formants it is both considerably faster and (arguably) more intuitive. If you are wondering why we should bother to do iSTFT and then again STFT before filtering the voiced component, rather than simply applying the filter to the rolloff matrix before the iSTFT, this is an annoying consequence of some complexities of the temporal structure of a bout, especially of applying non-stationary filters (moving formants) that span multiple syllables. With noise, however, this extra step can be avoided, and we only do iSTFT once.

Having briefly looked at the fundamental principles of sound generation, we proceed to control parameters. The aim of the following presentation is to offer practical tips on using soundgen. For further information on more fundamental principles of acoustics and sound synthesis, you may find the vignettes in seewave very helpful, or you can check out the book on sound synthesis in R by Jerome Sueur, the author of the seewave package. Some essential references are also listed at the end of this vignette, especially those sources that have inspired particular routines in soundgen.

2 Using soundgen

2.1 Where to start

To generate a sound, you can either type soundgen_app() to open an interactive Shiny app or call soundgen() from R console with manually specified parameters. presets contains a collection of presets that demonstrate some of the possibilities. More information is available on the project’s homepage at

2.2 Audio playback

Audio playback may fail, depending on your platform and installed software. Soundgen relies on tuneR library for audio playback, via a wrapper function called playme() that accepts both Wave objects and simple numeric vectors. If soundgen(play = TRUE) throws an error, make sure the audio can be played before you proceed with using soundgen. To do so, save some sound as a vector first: sound = soundgen(play = FALSE) or even simply sound = rnorm(10000). Then try to find a way to play this vector sound. You may need to change the default player in tuneR or install additional software. See the seewave vignette on sound input/output for an in-depth discussion of audio playback in R. Some tips are also available here.

Because of possible errors, audio playback is disabled by default in the rest of this vignette. To turn it on without changing any code, simply set the global variable playback = TRUE:

playback = c(TRUE, FALSE)[2]

2.3 From the console

The basic workflow from R console is as follows:

s = soundgen(play = playback)  # default sound: a short [a] by a male speaker
# 's' is a numeric vector - the waveform. You can save it, play it, plot it, ...

# names(presets)  # speakers in the preset library
# names(presets$Chimpanzee)  # presets per speaker
s = eval(parse(text = presets$Chimpanzee$Scream_conflict))  # a screaming chimp
# playme(s)

2.4 From the app

The basic workflow in the Shiny app is as follows:

  1. Start the app by typing soundgen_app(). RStudio should open it in the default web browser (there will be no sound if the app runs in an RStudio window instead of a browser). Firefox and Chrome are known to work. Safari will probably fail to play back the generated audio, although the output can still be exported as a .wav file.
  2. Set parameters in the tabs on the left (see the sections below for details). You can also start with a preset that resembles the sound you want and then fine-tune control parameters.
  3. Check the preview plots and tables of anchors to ensure you get what you want.
  4. Click Generate. This will create a .wav file, play it, and display the spectrogram or long-term average spectrum.
  5. Save the generated sound or go back to (1) to make further adjustments.

TIP The interactive app soundgen_app() gives you the exact R code for calling soundgen(), which you can copy-paste into your R environment and generate manually the same sound as the one you have created in the app. If in doubt about the right format for a particular argument, you can use the app first, copy-paste the code into your R console, and modify it as needed. You can also import an existing formula into the app, adjust the parameters in an interactive environment, and then export it again. BUT: the app can only use a single value for many parameters that are vectorized when called from the command line (rolloff, jitterDep, etc.).

2.5 Syllables

If you need to generate a single syllable without pauses, the only temporal parameter you have to set is sylLen (“Syllable length, ms” in the app). For a bout of several syllables, you have two options:

  1. Set nSyl (“Number of syllables” in the app). Unvoiced noise is then allowed to fill in the pauses (if noise is longer than the voiced part), and you can specify an amplitude contour, intonation contour, and formant transitions that will span the entire bout. For ex., if the vowel sequence in a three-syllable bout is “uai”, the output will be approximately “[u] – pause – [a] – pause – [i]”.
s = soundgen(formants = 'uai', repeatBout = 1, nSyl = 3, play = playback)
# to replay without re-generating the sound, type "playme(s)"
  1. Set repeatBout (“Repeat bout # times” in the app). This is the same as calling soundgen repeatedly with the same settings or clicking the Generate button in the app several times. If temperature = 0, you will get exactly the same sound repeated each time, otherwise some variation will be introduced. For the same “uai” example, the output will be “[uai] – pause – [uai] – pause – [uai]”.
s = soundgen(formants = 'uai', repeatBout = 3, nSyl = 1, play = playback)
# playme(s)

Like most arguments to soundgen, sylLen and pauseLen can also be vectors. For example, if you want to synthesize 5 syllables of progressively shorter duration and separated by increasingly longer pauses, you can write:

s = soundgen(nSyl = 5, 
             sylLen = c(300, 100),   # linearly decreasing from 300 to 100 ms
             pauseLen = c(50, 150),  # increasing from 50 to 150 ms
             plot = TRUE, osc = TRUE,
             play = playback)

# playme(s)

For more complicated changes in the length of syllables or pauses, you can use the function getSmoothContour to upsample your anchors (see “Intonation” for examples) or manually code longer sequences of values. The length of your input vector doesn’t matter: it will be up- or downsampled automatically. This also works with all other vectorized arguments to soundgen (rolloff, jitterDep, vibratoFreq, etc).

s = soundgen(
  nSyl = 10, 
  sylLen = c(60, 200, 90, 50, 50),  # quickly up to 200 and down to 50
  pauseLen = c(50, 60, 80, 150),    # growing ~exponentially
  plot = TRUE, osc = TRUE,
  play = playback

As a special case, your values will be used without interpolation if you provide exactly as many as needed:

s = soundgen(
  nSyl = 5, 
  sylLen = c(300, 100, 400, 50, 100),  # 5 syllables, 5 values
  pauseLen = c(50, 150, 50, 100),      # 4 pauses, 4 values
  plot = TRUE, osc = TRUE,
  play = playback

You can use both repeatBout and nSyl simultaneously. The pause between bouts is equal to the length of the first syllable:

s = soundgen(
  repeatBout = 2,
  nSyl = 3, 
  sylLen = c(300, 100), 
  pauseLen = c(100, 50),     
  plot = TRUE, osc = TRUE,
  play = playback

Note that all pauses between syllables have to be positive. A negative pause (overlap) between bouts is allowed, but you have to enforce it with invalidArgAction = "ignore":

s = soundgen(
  repeatBout = 2,
  sylLen = c(300, 100), 
  pauseLen = -50,     
  plot = TRUE, osc = TRUE,
  play = playback,
  invalidArgAction = 'ignore'
## Warning in soundgen(repeatBout = 2, sylLen = c(300, 100), pauseLen = -50, :
## pauseLen outside its range in 'permittedValues'

2.6 Intonation

2.6.1 One syllable

When we hear a tonal sound such as someone singing, one of its most salient characteristics is intonation or, more precisely, the contour of the fundamental frequency (f0), or, even more precisely, the contour of the spectral band which is perceived to correspond to the fundamental frequency (pitch). Soundgen literally generates a sine wave corresponding to f0 and several more sine waves corresponding to higher harmonics, so f0 is straightforward to implement. However, how can its contour be specified with as few parameters as possible? The solution adopted in soundgen is to take one or more anchors as input and generate a smooth contour that passes through all anchors.

In the simplest case, all anchors are equidistant, dividing the sound into equal time steps. You can then use the “short format”, specifying anchors as a numeric vector. For example:

sound = soundgen(pitch = 440, play = playback)  # steady pitch at 440 Hz
sound = soundgen(pitch = 3000:2000, play = playback)  # downward chirp
sound = soundgen(pitch = c(150, 250, 100), sylLen = 700, play = playback)  # up and down

You can also use a mathematical formula to produce very precise pitch modulation, just check that the values are on the right scale. For example, sinusoidal pitch modulation can be created as follows:

anchors = (sin(1:70 / 3) * .25 + 1) * 350
plot(anchors, type = 'l', xlab = 'Time (points)', ylab = 'Pitch (Hz)')
sound = soundgen(pitch = anchors, sylLen = 1000, play = playback)

For more flexibility, anchors can also be specified at arbitary times using the “long format” - a dataframe with two columns: time (ms) and value (in the case of pitch, this is frequency in Hz). This is particularly useful for noise, since the unvoiced component can be present both before and after the voiced component (see the section on unvoiced component), and for adding anchors interactively in the Shiny app. The function that generates smooth contours of f0 and other parameters is getSmoothContour(), and its interpolation algorithm is controlled by soundgen argument interpol. You do not have to call getSmoothContour() explicitly, but sometimes it can be helpful to do so in order to visualize the curve implied by your anchors. Time can range from 0 to 1, or it can be specified in ms – it makes no difference, since the produced contour is rescaled to match syllable duration.

For example, say we want f0 first to increase sharply from 350 to 700 Hz and then to slowly return to baseline. Time anchors can then be specified as c(0, .1, 1) (think of it as “start”, “10%”, and “end” of the sound), and the arguments len and samplingRate together determine the duration: len / samplingRate gives duration in seconds. Values are processed on a logarithmic (musical) scale if thisIsPitch is TRUE, and the resulting curve is smoothed (the default behavior is to use loess for up to 10 anchors, cubic spline for 11-50 anchors, and linear interpolation for >50 anchors):

a = getSmoothContour(anchors = data.frame(time = c(0, .1, 1), 
                                          value = c(350, 700, 350)),
                     len = 7000, thisIsPitch = TRUE, plot = TRUE, samplingRate = 3500)

A sound with this intonation can be generated as follows:

sound = soundgen(sylLen = 900, play = playback,
                 pitch = data.frame(time = c(0, .1, 1),  # or (c(0, 30, 300)) - in ms
                                    value = c(350, 700, 350)))

TIP Many arguments to soundgen are vectorized, and most vectorized arguments understand the “anchor format” you just encountered above, namely something like my_argument = data.frame(time = ..., value = ...), where time can be in ms or ~[0, 1]. See ?soundgen for a complete list of anchor-format arguments and keep in mind two important special cases that use a slightly different format: formants and ampl (see below).

To get more complex curves, simply add more anchors. The assumption behind specifying an entire contour with a few discrete anchors is that the contour is smooth and continuous. However, there may be special occasions when you do want a discontinuity such as an instantaneous pitch jump. The default behavior of getSmoothContour() is to make a jump if two anchors are closer than one percent of the syllable length (as specified with the default jumpThres = 0.01). To make a pitch jump, you thus provide two values of f0 that are very close in time, for example:

s = soundgen(sylLen = 800, plot = TRUE, play = playback,
             pitch = data.frame(time = c(0, .2, .201, .4, 1), 
                                value = c(900, 1200, 1800, 2000, 1500)))

TIP Given the same anchors, the shape of the resulting curve depends on syllable duration. That’s because the amount of smoothing is adjusted automatically as you change syllable duration. Double-check that all your contours still look reasonable if you change the duration!

To draw f0 contour in the Shiny app, use “Intonation / Intonation syllable” tab and click the intonation plot to add anchors. Soundgen then generates a smooth curve through these anchors. If you click the plot close to an existing anchor, the anchor moves to where you clicked; if you click far from any existing anchor, a new anchor is added. To remove an anchor, double-click it. To go back to a straight line, click the button labeled “Flatten pitch contour”. Exactly the same principles apply to all anchors in soundgen_app (pitch, amplitude, mouth opening, and noise). Note also that all contours are rescaled when the duration changes, with the single exception of negative time anchors for noise (i.e. the length of pre-syllable aspiration does not depend on syllable duration).

2.6.2 Multiple syllables

If the bout consists of several syllables (nSyl > 1), you can also specify the overall intonation over several syllables using pitchGlobal (app: “Intonation / Intonation global”). The global intonation contour specifies the deviation of pitch per syllable from the main pitch contour in semitones, i.e. 12 semitones = 1 octave. In other words, it shows how much higher or lower the average pitch of each syllable is compared to the rest of the syllables. For ex., we can generate five seagull-like sounds, which have the same intonation contour within each syllable, but which vary in average pitch spanning about an octave in an inverted U-shaped curve. Note that the number of anchors need not equal the number of syllables:

s = soundgen(nSyl = 5, sylLen = 200, pauseLen = 140, plot = TRUE, play = playback,
             pitch = data.frame(time = c(0, 0.65, 1), 
                                value = c(977, 1540, 826)),
             pitchGlobal = data.frame(time = c(0, .5, 1), 
                                      value = c(-6, 7, 0)))

# pitchGlobal = c(-6, 7, 0) is equivalent, since time steps are equal

TIP Calling soundgen with argument plot = TRUE produces a spectrogram using a function from soundgen package, spectrogram. Type ?spectrogram or ?spectrogramFolder and see the vignette on acoustic analysis for plotting tips and advanced options. You can also plot the waveform produced by soundgen using any other function, e.g. seewave::spectro

2.6.3 Vibrato

Vibrato adds frequency modulation (FM) to f0 contour by modifying f0 per glottal cycle. In contrast to irregular jitter and temperature-related random drift, however, this FM is regular, namely sinusoidal:

s1 = soundgen(vibratoDep = 0:3, vibratoFreq = 7:5, sylLen = 2000, play = playback,
              pitch = c(300, 280), plot = TRUE)

2.7 Hyper-parameters

2.7.1 Temperature

It is a basic principle of soundgen that random variation can be introduced in the generated sound. This behavior is controlled by a single high-level parameter, temperature (app: “Main / Hypers”). If temperature = 0, you will get exactly the same sound by executing the same call to soundgen repeatedly. If temperature > 0, each generated sound will be somewhat different, even if all the control parameters are exactly the same. In particular, positive temperature introduces fluctuations in syllable structure, all contours (intonation, breathing, amplitude, mouth opening), and many effects (jitter, subharmonics, etc). It also “wiggles” user-specified formants and adds new formants above the specified ones at a distance calculated based on the estimated vocal tract length (see Section “Spectral filter (formants)” below).

Code example :

# the sound is a bit different each time, because temperature is above zero
s = soundgen(repeatBout = 3, temperature = 0.3, play = playback)
# Setting repeatBout = 3 is equivalent to:
# for (i in 1:3) soundgen(temperature = 0.3, play = playback)

If you don’t want stochastic behavior, set temperature to zero. But note that some effects, notably jitter and subharmonics, will then be added in an all-or-nothing manner: either to the entire sound or not at all. Also note that additional formants will not be added above the user-specified ones if temperature is exactly 0. In practice it may be better to set temperature to a very small positive value like 0.01. You can also change the extent to which temperature affects different parameters (e.g., if you want more variation in intonation and less variation in syllable structure). To do so, use tempEffects, which is a list of scaling coefficients that determine how much different parameters vary at a given temperature. tempEffects includes the following scaling coefficients:

  • sylLenDep: random fluctuations of the duration of syllables and pauses between syllables
  • formDrift: the amount of random drift of formants
  • formDisp: irregularity of the dispersion of stochastic formants that are added above user-specified formants (if any) at distances consistent with the specified length of the vocal tract vocalTract
  • pitchDriftDep: amount of slow random drift of f0 (the higher, the more f0 changes)
  • pitchDriftFreq: frequency of slow random drift of f0 (the higher, the faster f0 changes)
  • amplDriftDep: drift of amplitude mirroring pitch drift
  • subDriftDep: drift of subharmonic frequency and bandwidth mirroring pitch drift
  • rolloffDriftDep: drift of rolloff mirroring pitch drift
  • pitchAnchorsDep: random fluctuations of user-specified pitch anchors across syllables (if nSyl > 1)
  • noiseAnchorsDep: random fluctuations of user-specified noise anchors across syllables (if nSyl > 1)
  • amplAnchorsDep: random fluctuations of user-specified amplitude anchors across syllables (if nSyl > 1)
  • specDep: random fluctuations of rolloff, nonlinear effects, attack

The default value of each scaling parameter is 1. To enhance a particular component of stochastic behavior, set the corresponding coefficient to a value >1; to remove it completely, set its scaling coefficient to zero.

# despite the high temperature, temporal structure does not vary at all, 
# while formants are more variable than the default
s = soundgen(repeatBout = 3, nSyl = 2, temperature = .3, play = playback,
             tempEffects = list(sylLenDep = 0, formDrift = 3))

2.7.2 Other hypers

To simplify usage, there are a few other hyper-parameters. They are redundant in the sense that they are not strictly necessary to produce the full range of sounds, but they provide convenient shortcuts by making it possible to control several low-level parameters at once in a coordinated manner. Hyper-parameters are marked “hyper” in the Shiny app.

For example, to imitate the effect of varying body size, you can use maleFemale:

mf = c(-1,  # male: 100% lower f0, 25% lower formants, 25% longer vocal tract
       0,   # neutral (default)
       1)   # female: 100% higher f0, 25% higher formants, 25% shorter vocal tract
# See e.g.

for (i in mf) {
  s = soundgen(maleFemale = i, formants = NA, vocalTract = 17, play = playback)
  # Since `formants` are not specified, but temperature is above zero, a 
  # schwa-like sound with approximately equidistant formants is generated using
  # `vocalTract` (cm) to calculate the expected formant dispersion.

To change the basic voice quality along the breathy-creaky continuum, use creakyBreathy. It affects the rolloff of harmonics, the type and strength of pitch effects (jitter, subharmonics), and the amount of aspiration noise. For example:

cb = c(-1,  # max creaky
       -.5, # moderately creaky
       0,   # neutral (default)
       .5,  # moderately breathy
       1)   # max breathy (no tonal component)
for (i in cb) {
  soundgen(creakyBreathy = i, play = playback)

2.8 Amplitude envelope

Use ampl and amplGlobal to modulate the amplitude (loudness) of an individual syllable or a polysyllabic bout, respectively. In the app, they are found under “Amplitude / Amplitude syllable” and “Amplitude / Amplitude global”. Note that ampl affect only the voiced component, while amplGlobal, attackLen (“Attack length, ms” in the app), and amDep (“Amplitude / Amplitude modulation / AM depth”) affect both the voiced and the unvoiced components. Avoid attackLen = 0, since that can cause clicks.

# each syllable has a 10-dB dip in the middle (note the dumbbell shapes 
# in the oscillogram under the spectrogram), and there is an overall fade-out
# over the entire bout
s = soundgen(nSyl = 4, 
             ampl = data.frame(time = c(0, .3, 1),  # unequal time steps
                               value = c(0, -10, 0)),
             amplGlobal = c(0, -20),  # this fade-out applies to noise as well
             noise = -20,
             plot = TRUE, osc = TRUE, heights = c(1, 1), play = playback)

The dynamic amplitude range is determined by dynamicRange. This parameter sets the minimum level of loudness, below which components are discarded as essentially silence. For maximum sound quality, set a high dynamicRange, like 120 dB. This helps to avoid artifacts like audibly clicking harmonics, but it also slows down sound generation. The default is 80 dB.

Rapid amplitude modulation imitating a trill is implemented by multiplying the synthesized waveform by a wave with adjustable shape amShape (defaults to approximately sine), frequency amFreq, and amplitude amDep:

s = soundgen(sylLen = 1000, formants = NA,
             # set the depth of AM (0% = none, 100% = max)
             amDep = c(0, 100),   
             # set AM frequency in Hz (vectorized)
             amFreq = c(50, 25),  
             # set the shape: 0 = close to sine, -1 = notches, +1 = clicks
             amShape = 0,  
             # asymmetrical attack: 20 ms at the beginning and 140 ms at the end
             attackLen = c(20, 140),
             plot = TRUE, osc = TRUE, heights = c(1, 1), play = playback)

A common special case of modifying the amplitude envelope of a synthesized or recorded sound is to flatten it, making sure the amplitude remains relatively stable throughout the duration of the signal. There is a separate function for achieving this, namely flatEnv():

s = rnorm(500) * seq(1, 0, length.out = 500)
s1 = flatEnv(s, plot = TRUE, killDC = TRUE, windowLength_points = 50)

Another common modification is to fade the sound in and/or out. One way to do this is to change the attack (which affects both the beginning and the end) or to use amplitude anchors. On other occasions, or if your sound already exists and you want to change it, the way to go about it is to use a separate function, fade(). This also gives you more options, e.g. different attack shapes, while soundgen() defaults to linear fade-in/out for attack.

# Create a sound with sharp attack
s = soundgen(sylLen = 1000, addSilence = 0, 
             attackLen = 10)  
# playme(s)
s1 = fade(s, fadeIn = 200, fadeOut = 300, samplingRate = 16000,
          shape = 'logistic', steepness = 8, plot = TRUE)
# playme(s1)
# different fades are available: linear, logarithmic, etc

2.9 Spectral filter (formants)

2.9.1 Vowel presets

Argument formants (tab “Tract / Formants” in the app) sets the formants – frequency bands used to filter the excitation source. Just as an equalizer in a sound player amplifies some frequencies and dampens others, aappropriate filters can be applied to a tonal sound to make it resemble a human voice saying different vowels. Formants are created in the frequency domain using all-pole models if all formant amplitudes are positive and zero-pole models if there are anti-formants with negative amplitudes (Stevens, 2000, ch. 3).

Using presets for callers M1 and F1, you can directly specify a string of vowels. When you call soundgen with formants = 'aouuuui' or some such character string, the values are taken from presets$M1$Formants (or presets$F1$Formants if the speaker is “F1” in the Shiny app). Formants can remain the same throughout the vocalizations, or they can move. For example, formants = 'ai' produces a sound that goes smoothly from [a] to [i], while formants = 'aaai' produces mostly [a] with a rapid transition to [i] at the very end. Argument formantStrength (“Formant prominence” in the app) adjusts the overall effect of all formant filters at once, and formantWidth scales all bandwidths.

s = soundgen(formants = 'ai', play = playback)
s = soundgen(formants = 'aaai', play = playback)

2.9.2 Manual formants

Presets give you some rudimentary control over vowels. More subtle control is necessary for animal sounds, as well as for human vowels that are not included in the presets dictionary or for non-default speakers. For such cases you will have to specify at least the frequency of each formant (and optionally, also amplitude, bandwidth, and time stamps for each value). The easiest, and normally sufficient, approach is to specify frequencies only and have soungen() figure out the appropriate amplitude and bandwidth for each formant. Bandwidth is calculated from frequency using a formula derived from human phonetic research. Namely, above 500 Hz it follows the original formula known as “TMF-1963” (Tappert, Martony, and Fant, 1963), and below 500 Hz it applies a correction to allow for energy losses at low frequencies (Khodai-Joopari & Clermont, 2002). See the internal function soundgen:::getBandwidth() if you are interested. Formant amplitudes are normally assumed to be determined by their frequency and bandwidth (see Stevens, 2000), but you can override this by specifying amplitudes explicitly. Note that you should then specify the amplitudes of all formants, not just one, otherwise you can get unexpected behavior. For moving formants, provide multiple values, which assumes equal time steps, or specify time points explicitly, where time varies from 0 to 1 (to be scaled appropriately depending on the length of sound). For example:

# shorthand specification with three stationary formants
formants = c(300, 2500, 3200)

# shorthand specification with two moving formants
formants = list(f1 = c(300, 900), f2 = c(2500, 1500))

# full specification with two moving formants and non-default amplitude and bandwidth
formants = list(
  f1 = data.frame(time = c(0, 1), 
                  freq = c(300, 900), 
                  amp = c(30, 10), 
                  width = 120),
  f2 = data.frame(time = c(0, 1), 
                  freq = c(2500, 1500), 
                  amp = 30, 
                  width = c(0, 240)))

Feed these lists into soundgen() to hear what they sound like.

2.9.3 Vocal tract length

In addition to user-specified formants, higher formants are added automatically based on the length of vocal tract length estimated from the user-specified formant frequency values. The function that estimates vocal tract length is imaginatively called estimateVTL:

estimateVTL(formants = c(500, 1500, 2550))  # 17.5 cm
estimateVTL(formants = c(300, 1100, 2000))  # 22.8 cm

TIP A more general function called schwa() both estimates VTL and allows you to compare measured formant frequencies with those expected for a neutral schwa sound and perform more sophisticated operations with formants. See ?schwa for more details if you are working with vowels

It is usually useful to allow soundgen to create upper formants automatically based on the estimated VTL, since upper formants are typically less perceptually salient. As a result, we don’t want to spend too much time specifying them manually, but still we don’t want them to be completely absent, either, since that makes for very weak high frequencies in the spectrum. An approximation based on standard open-ended tube models is often good enough for calculating the missing formant frequencies. You can remove them by setting temperature = 0 or formantDepStoch = 0, but note that without higher formants the entire spectrum loses energy at higher frequencies:

s1 = soundgen(formants = c(800, 1200), play = playback, plot = TRUE)

s1 = soundgen(formants = c(800, 1200), formantDepStoch = 0,
              play = playback, plot = TRUE)

Another useful method is to specify vocal tract length without any formants. In this case soundgen() approximates a neutral schwa sound for an animal with a vocal tract that looks like a uniform tube of this length. Crude, but often sufficient. A toy example (check presets for some more realistic sounds created using this method):

s1 = soundgen(formants = NULL, vocalTract = 24, play = playback, plot = TRUE)

s1 = soundgen(formants = NULL, vocalTract = 12, play = playback, plot = TRUE)

2.9.4 Spectral envelope

Sometimes it may be useful to view moving formants before synthesizing the sound. The way to do this is to call explicitly the function that handles all formant processing under the hood, namely getSpectralEnvelope:

# plotting directly from getSpectralEnvelope() in spectrogram form
s = getSpectralEnvelope(nr = 1024,  # freq bins in FFT frame (window_length / 2)
                        nc = 50,    # time bins
                        samplingRate = 16000, 
                        formants = formants,
                        plot = TRUE, 
                        dur = 1500,   # just an example
                        colorTheme = 'seewave',
                        lipRad = 6) 

# Note that lip radiation is also specified here (dB). 
# This has the effect of amplifying higher frequencies to mimic lip radiation. 

Note that, in addition to formants, lip and nose radiation is also handled by this function (see the next section on mouth opening).

TIP When using the app, you can start with a formant preset by typing in a vowel string, and then you can modify it. This way you don’t have to remember the right format. If you edit the list of formants and nothing in the sound seems to be changing, there may be a misprint, missing comma, etc.

2.9.5 Antiformants

For even more advanced spectral filters, you can specify both formants (poles) and antiformants (zeros). This may be useful if you want to create a nasalized sound. The numbering of formants is arbitrary, as long as they are arranged in the right order. For example, if you want to insert a new formant between F1 and F2 without renaming all higher formants, call it “f1.5” or something like that. It is important to use a non-integer number, since otherwise these additional formants will be inappropriately used to estimate the length of vocal tract and adding stochastic formants above the ones you specify (that is, if temperature > 0 and vocalTract = NA). If you want antiformants, you should specify the ampitude of all formants, not only zeros, since there is no simple way for soundgen() to “guess” the most appropriate amplitudes for zero-pole models. For example, a slow transition from [a] to [a nasalized] might be coded as follows (note that formant f1.7 has negative amplitude, so f1.5 and f1.7 form a pole-zero pair):

formants = list(
  f1   = data.frame(time = c(0, 1), freq = c(880, 900), 
                    amp = c(30, 20), width = c(80, 120)), 
  f1.5 = data.frame(time = c(0, 1), freq = 600, 
                    amp = c(0, 30), width = 80),   # additional pole
  f1.7 = data.frame(time=c(0, 1), freq = 750, 
                    amp = c(0, -30), width = 80),  # zero
  f2   = data.frame(time = c(0, 1), freq = c(1480, 1250), 
                    amp = c(30, 20), width = c(120, 200)), 
  f3   = data.frame(time=c(0, 1), freq = c(2900, 3100), 
                    amp = 25, width = 200))
# se = getSpectralEnvelope(nr = 512, nc = 100, formants = formants, plot = TRUE)
s = soundgen(sylLen = 1500, play = playback, 
             pitch = 140, formants = formants, rolloff = -2)
spectrogram(s, samplingRate = 16000, ylim = c(0, 4), contrast = .5, 
            windowLength = 10, step = 5, colorTheme = 'seewave')
# long-term average spectrum (less helpful for moving formants but very good for stationary):
# seewave::meanspectrogram(s, f = 16000, wl = 256)  

2.9.6 Mouth opening

A convenient shortcut for manipulating formants without coding all transitions by hand is provided by mouth argument (in the app, tab “Tract / Mouth opening”). This can be thought of as a hyper-parameter offering an easy way to define moving formants within a bout: all formants go down as the mouth closes and rise as it opens (see Moore, 2016). In addition, an open mouth has lip radiation, which has the effect of amplifying higher frequencies. Lip radiation is replaced by nose radiation when the mouth is completely closed, dampening the higher frequencies, and the vowel is automatically nasalized using a simple approximation (Hawkins & Stevens, 1985). Basically, with the mouth closed we switch from a tube open at one end to a tube closed at both ends and coupled with a (simplified) nasal cavity. Despite being a crude model of what really happens when a vocalizing animal closes its mouth, in many cases mouth can save you a lot of manual coding of formants. The results are often surprisingly convincing, especially for vocalizations of non-human animals, in which formants are not routinely modulated independently of each other, as in human speech. Here is a simple example, with the mouth gradually opening and closing again:

s = soundgen(sylLen = 1200, play = playback, pitch = 140, 
             mouth = list(time = c(0, .3, .75, 1), 
                          value = c(0, 0, .7, 0)))
spectrogram(s, samplingRate = 16000, 
            ylim = c(0, 4), contrast = .5, 
            windowLength = 10, step = 5, 
            colorTheme = 'seewave', osc = TRUE)

TIP Here and elsewhere, I talk about applying soundgen to the task of synthesizing non-human sounds. It does work, but be aware that many computational routines are based on human phonetic research, simply because there is vastly more data available on human vocal production. For example, formant bandwidths and spectral consequences of nasalization are estimated based on human phonetics, but it is far from clear to what extent these equations are applicable to sounds produced by non-human mammals. Bird calls are again a whole new ball game. And once you move on to insects or non-biological sounds, just forget about hyperparameters like mouth and code everything at the lowest possible level.

2.9.7 Add formants to an existing sound

For some purposes it may be useful to separate the generation of glottal source (or another source of acoustic excitation) from its spectral filtering. You may also need to add formants to an existing waveform. To do so, you can call the helper function addFormants(), which normally works under the hood in soundgen. The algorithm is to take an STFT, multiply the resulting spectrum by the filter, and then convert it back to time domain via inverse STFT. The same function can theoretically be used to perform inverse filtering - that is, to remove formants from a signal - as long as you can provide a very accurate formant filter. See ?addFormants for more information.

2.10 Source spectrum (glottal source)

Soundgen produces tonal sounds by means of generating a separate sine wave for each harmonic. However, it is very tricky to choose the appropriate strength of each harmonic. The simplest solution is to make each higher harmonic slightly weaker than the previous one, say by setting a fixed exponential decay rate from lower to higher harmonics. The corresponding parameter in soundgen is rolloff (in the app, “Source rolloff, dB/octave”). Unfortunately, this is often not really good enough, necessitating several more control parameters.

Soundgen allows a lot of flexibility when specifying source spectrum. You can change the basic rolloff of harmonics per octave, producing a sharper or more gentle decline of energy over frequencies (rolloffOct), adjust rolloff depending on f0, so that high-pitch sounds will have a steeper rolloff (rolloffKHz), or add a parabolic correction (rolloffParab) that affects the first rolloffParabHarm harmonics. Working from R console, the relevant function is getRolloff. Its arguments are well-documented: type ?getRolloff for help. Here is just a single example:

# strong F0, rolloff with a "shoulder"
r = getRolloff(rolloff = c(-5, -20),  # rolloff parameters are vectorized
               rolloffOct = -3,
               rolloffParab = -10, rolloffParabHarm = 13, 
               pitch_per_gc = c(170, 340), plot = TRUE)

# to generate the corresponding sound:
s = soundgen(sylLen = 1000, rolloff = c(-5, -20), rolloffOct = -3,
             rolloffParab = -10, rolloffParabHarm = 13,
             pitch = c(170, 340),  play = playback)

In the app the relevant parameters are found in the tab “Source / Rolloff”. To develop an intuition for source spectrum settings, I recommend practicing with disabled formants in the app (set “Formants prominence” under “Tract / Formants” to 0). This way you can isolate the effects of source spectrum and use the preview plot for instant feedback – it shows the rolloff for the lowest and the highest pitch in your intonation contour. Rolloff parameters are vectorized, but this functionality is only available from R console. However, rolloff also varies over time if temperature is above zero (use tempEffects$specDep to control the amount of stochastic variation of rolloff and other spectral characteristics).

2.10.1 Closed glottis

If f0 is very low, as in vocal fry or some animal vocalizations like crocodile roaring or elephant rumbling, individual glottal pulses can be both seen on a spectrogram and peiceived as distinct percussion-like acoustic events separated by noticeable pauses. Soundgen can create such sounds by switching to a new mode of production: instead of synthesizing continous sine waves spanning the entire syllable, it creates each glottal pulse individually (each with its full set of harmonics) and then glues them together with pauses in between.

This is a lot slower than continuous sine wave synthesis and mostly justified for very low-pitched sounds, since with higher pitch there will be too few points per glottal cycle to sound convincing without increasing samplingRate to astronomical values. For example:

# Not a good idea: samplingRate is too low
s1 = soundgen(pitch = c(1500, 800), glottis = 75, 
              samplingRate = 16000, play = playback)

# This sounds better but takes a long time to synthesize:
s2 = suppressWarnings(soundgen(pitch = c(1500, 800), glottis = 75, 
                               samplingRate = 80000, play = playback, 
                               invalidArgAction = 'ignore'))
# NB: invalidArgAction = 'ignore' forces a "weird" samplingRate value
# to be accepted without question

# Now this is what this feature is meant for: vocal fry
s3 = soundgen(sylLen = 1500, pitch = c(75, 40), 
              glottis = c(0, 700), 
              samplingRate = 16000, play = playback)
plot(s3, type = 'l', xlab = '', ylab = '')

2.11 Nonlinear effects

Soundgen can add subharmonics and sidebands or even approximate deterministic chaos by adding strong jitter and shimmer. These effects basically make the sound appear noisy / harsh / rough. Jitter and shimmer are created by adding random noise to the periods and amplitudes, respectively, of the “glottal cycles”. Subharmonics could be created by adding rapid amplitude and/or frequency modulation, but for maximum flexibility soundgen uses a different - slightly hacky, but powerful - technique of literally setting up an additional sine wave for each subharmonic based on the desired frequency of subharmonics (subFreq). The actual frequency will not be exactly equal to subFreq, since it must be a fraction of f0 at all time points (one half, one third, etc). The amplitude of each subharmonic is a function of its distance from the nearest harmonic of the f0 stack and the desired width of sidebands (subDep). This way we can create either subharmonics or narrow sidebands that vary naturally as f0 changes over time, producing bifurcations and switching between different subharmonic regimes (see Wilden et al., 2012).

The main limitation of this approach is that it is too computationally costly to generate variable numbers of subharmonics for the entire bout. The solution currently adopted in soundgen is to break longer sounds into so-called “epochs” with a constant number of subharmonics in each. The epochs are synthesized separately, trimmed to the nearest zero crossing, and then glued together with a rapid crossFade(). This is suboptimal, since it shortens the sound and may introduce audible artifacts at transitions between epochs. shortestEpoch controls the approximate minimum length of each epoch. Longer epochs minimize problems with transitions, but the behavior of subharmonics then becomes less variable, since their number is constrained to be constant within each epoch.

2.11.1 Nonlinear regimes

To add nonlinear effects, you can use just two parameters – nonlinBalance and nonlinDep – that together regulate what proportion of the sound is modified and to what extent. However, for best results it is advisable to set advanced settings manually (see below). At temperature > 0, nonlinBalance creates a random walk that divides each syllable into epochs defined by their regime, using two thresholds to determine when a new regime begins (see Fitch et al., 2002):

  1. Regime 1: no nonlinear effects. If nonlinBalance = 0%, the whole syllable is in regime 1.

  2. Regime 2: subharmonics only. Note that subharmonics are only added to segments with subFreq < f0 / 2.

  3. Regime 3: subharmonics and jitter. If nonlinBalance = 100%, the whole syllable is in regime 3.

nonlinDep is a hyper-parameter that adjusts several settings at once, making the voice harsher in pitch regimes 2 and 3, but without affecting the balance between regimes.

2.11.2 Subharmonics

Moving on to advanced nonlinear effects settings, subFreq (“Subharmonic frequency, Hz” in the app) and subDep (“Width of sidebands, Hz”) define the properties of subharmonics in pitch regimes 2 and 3. Say your vocalization has a relatively flat intonation contour with a fundamental frequency of about 800 Hz, and you want to add a single subharmonic (g0). You then set the expected subharmonic frequency to 400 Hz. Since g0 is forced to be an integer fraction of f0 at all time points, it will not be exactly 400 Hz, but it will produce a single subharmonic at f0 / 2 (as long as f0 stays close to 800 Hz: if f0 goes up to 1200 Hz, you will get two subharmonics instead, since 1200 / 400 = 3). The width of sidebands defines how quickly the energy of subharmonics dissipates at a remove from the nearest f-harmonic. For example, our single subharmonic is audible but weak at sideband width = 150 Hz, while it becomes strong enough to be perceived as the new f0 at sideband width = 400 Hz, effectively halving the pitch:

s1 = soundgen(subFreq = 400, subDep = 150, nonlinBalance = 100,
              jitterDep = 0, shimmerDep = 0, temperature = 0, 
              sylLen = 500, pitch = c(800, 900),
              play = playback, plot = TRUE, ylim = c(0, 3))
s2 = soundgen(subFreq = 400, subDep = 400, nonlinBalance = 100,
              jitterDep = 0, shimmerDep = 0, temperature = 0, 
              sylLen = 500, pitch = c(800, 900),
              play = playback, plot = TRUE, ylim = c(0, 3))

Sidebands may be easier to understand for high-pitched sounds with low subharmonic frequencies. For example, chimpanzees emit piercing screams with narrow subharmonic bands. If we set subFreq to 75 Hz and subDep to 130 Hz, subharmonics literally form a band around each harmonic of the main stack, creating a very distinct, immediately recognizable sound quality:

s = soundgen(sylLen = 800, 
             subFreq = 75, 
             # gradually increasing width of sidebands at 0-600 ms
             subDep = data.frame(time = c(0, 600, 650, 800), 
                                 value = c(0, 130, 0, 0)),  
             nonlinBalance = 100,
             jitterDep = 0, shimmerDep = 0, temperature = 0, 
             formants = NULL, play = playback,
             pitch = data.frame(time=c(0, .3, .9, 1), 
                                value = c(1200, 1547, 1487, 1154)))
spectrogram(s, 16000, windowLength = 50, ylim = c(0, 5), contrast = .7)

TIP The parameters regulating nonlinear effects are vectorized, so you can write subDep = c(0, 130), jitterDep = c(0, 1), etc., or use the “anchor format” as above (console only, not available in the app)

2.11.3 Jitter / shimmer

As for jitter in pitch regime 3, it wiggles both f0 and g0 harmonic stacks, blurring the spectrum. Parameter jitterDep (“Jitter depth, semitones” in the app) defines how much the pitch fluctuates, while jitterLen (“Jitter period, ms”) defines how rapid these fluctuations are. Slow jitter with a period of ~50 ms produces the effect of a shaky, unsteady voice. It may sound similar to a vibrato, but jitter is irregular. Rapid jitter with a period of ~1 ms, especially in combination with subharmonics, may be used to imitate deterministic chaos, which is found in voiced but highly irregular animal sounds such as barks, roars, noisy screams, etc. This works best for high-pitched sounds like screams. Shimmer is similar to jitter, except that it defines random fluctuations of the amplitude rather than frequency. It is controlled by two arguments, shimmerDep (percent) and shimmerLen (ms).

# To get jitter/shimmer without subharmonics, set `temperature = 0, subDep = 0`
# or a positive temperature and `nonlinBalance = 100, subDep = 0`
# and specify the required jitter depth and period
s1 = soundgen(jitterLen = 50, jitterDep = 1,  # shaky voice
              shimmerLen = 30, shimmerDep = 10,   
              sylLen = 1000, subDep = 0, nonlinBalance = 100,
              pitch =  c(150, 170), play = playback)
s2 = soundgen(jitterLen = 1, jitterDep = 1,   # harsh voice
              shimmerLen = 1, shimmerDep = 10, 
              sylLen = 1000, subDep = 0, nonlinBalance = 100,
              pitch =  c(150, 170), play = playback)

To get jitter + shimmer + subharmonics, set temperature to 0 (nonlinear effects are then applied to the entire sound) or use nonlinBalance close to 100% with temperature > 0 (effectively the same, but preserving stochastic behavior of other parameters). For example, barks of a small, annoying dog can be roughly approximated with this minimal code (ignoring respiration to keep things simple):

s = soundgen(repeatBout = 2, sylLen = 140, pauseLen = 100, 
             vocalTract = 8, formants = NULL, rolloff = 0,
             pitch = c(559, 785, 557), mouth =  c(0, 0.5, 0),
             nonlinBalance = 100, jitterDep = 1, subDep = 60, play = playback) 

2.11.4 Chaos

There is no way to synthesize true deterministic chaos with residual harmonic structure in soundgen. However, there are several roundabout ways to achieve a comparable effect. As already mentioned, strong jitter and shimmer create harsh sounds that are perceptually similar to deterministic chaos, especially for higher f0 values. Another method is to encode very rapid pitch jumps between harmonically related values, like this:

s = soundgen(sylLen = 1200, 
             pitch = list(
               time = c(0, 80, 81, 230, 231, 385, 
                        # 500 time anchors here - an episode of "chaos"
                        seq(385, 850, length.out = 500), 
                        851, 1020, 1021, 1085),
               value = c(700, 1130, 1000, 1200, 1860, 1840, 
                         # random f0 jumps b/w 1.2 & 1.8 KHz 
                         sample(c(1200, 1800), size = 500, replace = TRUE), 
                         1620, 1540, 1220, 900)),
             temperature = 0.05, 
             tempEffects = list(pitchDep = 0),
             nonlinBalance = 100, subDep = 0, jitterDep = .3,
             rolloffKHz = 0, rolloff = 0, formants = c(900, 1300, 3300, 4300),
             samplingRate = 22000, play = playback, plot = TRUE, osc = TRUE)

Incidentally, you can use similar tricks for introducing variation in any soundgen parameter. For example, you can use runif() or rnorm() to randomly vary things like mouth opening, pitch, amplitude. That’s the best part of working in R!

# run several times to appreciate the randomness
s = soundgen(sylLen = 800, 
             mouth = rnorm(n = 5, mean = .5, sd = .3),
             play = playback)

2.11.5 Specifying the timing of each nonlinear regime

Sometimes it may be necessary to control precisely the timing of each nonlinear regime. For example, in an experiment a sound containing nonlinear effects may need to be synthesized repeatedly, varying one parameter and preserving everything else, including nonlinear regimes. Normally soundgen divides a sound into different nonlinear regimes by generating a random walk, which also controls the drift of some other control parameters. Setting temperature at nearly zero (say, at 0.001) removes random variation in most control parameters, but the random walk for nonlinear effects still remains random. To standardize that random walk as well, use nonlinRandomWalk.

nonlinRandomWalk should be a vector containing 0, 1, and 2, where 0 = no nonlinearities, 1 = subharmonics, and 2 = subharmonics + jitter + shimmer. The number and order of 0/1/2 determines which nonlinear regime is active at which time. For example, this will make a sound with no effect in the first third, subharmonics in the second third, and jitter in the final third of the total duration:

rw_bin = c(rep(0, 100), rep(1, 100), rep(2, 100))
s = soundgen(sylLen = 800, pitch = 300, temperature = 0.001,
             subFreq = 100, subDep = 70, jitterDep = 1,
             nonlinRandomWalk = rw_bin, 
             play = playback, plot = TRUE, ylim = c(0, 4))

Make nonlinRandomWalk a fairly long vector for greater precision, i.e. not just c(0, 1) - because of the way approx works, that will NOT split the sound into 50% with no nonlinear effects and 50% with subharmonics. Instead, write c(rep(0, 50), rep(1, 50)) or some such.

You can also generate an actual random walk and then use it in several sounds to make sure their nonlinear effects have exactly the same timing. For example, here are two sounds with different pitch levels, but identical otherwise, including identical nonlinear regimes:

# set up a random walk (repeat until satisfied with the contour)
rw = getRandomWalk(len = 1000, rw_range = 100, 
                   trend = c(0.5, -0.5), rw_smoothing = .3)
rw_bin = getIntegerRandomWalk(rw, minLength = 100, plot = TRUE)
# synthesize two sounds with identical nonlinear effects but different f0
s1 = soundgen(sylLen = 800, pitch = 300, temperature = 0.001,
              subFreq = 100, subDep = 70, jitterDep = 1,
              nonlinRandomWalk = rw_bin, 
              play = playback, plot = TRUE, ylim = c(0, 4))
s2 = soundgen(sylLen = 800, pitch = 500, temperature = 0.001,
              subFreq = 100, subDep = 70, jitterDep = 1,
              nonlinRandomWalk = rw_bin, 
              play = playback, plot = TRUE, ylim = c(0, 4))

In case this whole random walk routines gets a bit overwhelming, here is a much easier way to control the timing of nonlinear effects. Set nonlinBalance to 100 (the entire vocalization) and vary the strength of nonlinear effects with their vectorized “depth” settings:

s = soundgen(
  # nonlinear settings
  nonlinBalance = 100, subDep = 0,  
  jitterDep = c(0, 0, 1.5, .5), shimmerDep = c(0, 0, 15, 5),
  # settings for high precision
  temperature = .001, dynamicRange = 120,             
  samplingRate = 22050, pitchSamplingRate = 22050,  
  # other settings
  sylLen = 1000, pitch = c(240, 200),
  rolloff = c(-20, -18, -23, -28), vibratoDep = .2,
  formants = c(800, 1400, 2500, 3700, 5000, 6800),
  noise = data.frame(time = c(0, 340, 900, 1000), 
                     value = c(-60, -45, -60, -80) + 5),
  rolloffNoise = -8,
  mouth = c(.55, .5, .45, .6),
  play = playback, plot = TRUE, osc = TRUE, ylim = c(0, 4)