Last updated on 2018-10-19 01:46:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.8.1 | 5.05 | 60.73 | 65.78 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.3.8.1 | 3.37 | 47.17 | 50.54 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.3.8.1 | 76.68 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.8.1 | 75.12 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.3.8.1 | 9.00 | 93.00 | 102.00 | NOTE | |
| r-patched-linux-x86_64 | 1.3.8.1 | 3.42 | 58.53 | 61.95 | NOTE | |
| r-patched-solaris-x86 | 1.3.8.1 | 88.70 | NOTE | |||
| r-release-linux-x86_64 | 1.3.8.1 | 3.89 | 57.95 | 61.84 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.3.8.1 | 7.00 | 94.00 | 101.00 | NOTE | |
| r-release-osx-x86_64 | 1.3.8.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3.8.1 | 5.00 | 90.00 | 95.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.3.8.1 | NOTE |
Version: 1.3.8.1
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
diseq.ci summary.LD.data.frame
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.3.8.1
Check: R code for possible problems
Result: NOTE
HWE.chisq.genotype: no visible global function definition for
‘chisq.test’
HWE.chisq.genotype: no visible global function definition for ‘pchisq’
LD.genotype: no visible global function definition for ‘optimize’
LD.genotype: no visible global function definition for ‘pchisq’
LDplot: no visible global function definition for ‘matplot’
LDplot: no visible global function definition for ‘axis’
LDplot: no visible global function definition for ‘title’
LDtable: no visible global function definition for ‘heat.colors’
LDtable: no visible global function definition for ‘image’
LDtable: no visible global function definition for ‘abline’
LDtable: no visible global function definition for ‘axis’
LDtable: no visible global function definition for ‘par’
LDtable: no visible global function definition for ‘strwidth’
LDtable: no visible global function definition for ‘strheight’
LDtable: no visible global function definition for ‘text’
LDtable: no visible global function definition for ‘title’
diseq.ci : <anonymous>: no visible global function definition for
‘quantile’
groupGenotype: no visible global function definition for ‘mapLevels<-’
groupGenotype: no visible global function definition for ‘as.levelsMap’
hapenum: no visible global function definition for ‘complete.cases’
hapfreq: no visible global function definition for ‘complete.cases’
hapshuffle: no visible global function definition for ‘runif’
plot.LD.data.frame: no visible global function definition for
‘heat.colors’
plot.LD.data.frame: no visible global function definition for ‘par’
plot.genotype: no visible global function definition for ‘barplot’
power.casectrl.plot: no visible global function definition for
‘matplot’
power.casectrl.plot: no visible global function definition for ‘abline’
power.casectrl.plot: no visible global function definition for ‘legend’
power.casectrl.plot: no visible global function definition for
‘locator’
pw: no visible global function definition for ‘lm’
pw: no visible global function definition for ‘plot’
pw: no visible global function definition for ‘anova’
simu.genotype.conti: no visible global function definition for ‘lm’
simu.genotype.conti: no visible global function definition for ‘plot’
simu.genotype.conti: no visible global function definition for ‘anova’
write.marker.file: no visible global function definition for
‘write.table’
write.pedigree.file: no visible global function definition for
‘write.table’
write.pop.file: no visible global function definition for ‘write.table’
Undefined global functions or variables:
abline anova as.levelsMap axis barplot chisq.test complete.cases
heat.colors image legend lm locator mapLevels<- matplot optimize par
pchisq plot quantile runif strheight strwidth text title write.table
Consider adding
importFrom("grDevices", "heat.colors")
importFrom("graphics", "abline", "axis", "barplot", "image", "legend",
"locator", "matplot", "par", "plot", "strheight",
"strwidth", "text", "title")
importFrom("stats", "anova", "chisq.test", "complete.cases", "lm",
"optimize", "pchisq", "quantile", "runif")
importFrom("utils", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.3.8.1
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘GeneticsDesign’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 1.3.8.1
Check: Rd \usage sections
Result: NOTE
S3 methods shown with full name in documentation object 'diseq':
‘diseq.ci’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64