Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.
| Version: | 0.99-5 |
| Depends: | R (≥ 2.14.0) |
| Imports: | grid, genetics, snpStats |
| Suggests: | rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2 |
| Published: | 2018-08-16 |
| Author: | Ji-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Jinko Graham [aut] |
| Maintainer: | Brad McNeney <mcneney at sfu.ca> |
| License: | GPL-3 |
| URL: | http://stat.sfu.ca/statgen/research/ldheatmap.html |
| NeedsCompilation: | no |
| Citation: | LDheatmap citation info |
| Materials: | ChangeLog |
| In views: | Genetics |
| CRAN checks: | LDheatmap results |
| Reference manual: | LDheatmap.pdf |
| Vignettes: |
LDheatmap LDheatmap adding tracks example |
| Package source: | LDheatmap_0.99-5.tar.gz |
| Windows binaries: | r-devel: LDheatmap_0.99-5.zip, r-release: LDheatmap_0.99-5.zip, r-oldrel: LDheatmap_0.99-5.zip |
| OS X binaries: | r-release: LDheatmap_0.99-5.tgz, r-oldrel: LDheatmap_0.99-5.tgz |
| Old sources: | LDheatmap archive |
| Reverse imports: | synbreed |
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