Provides a bioinformatics pipeline for DNA meta-barcoding analysis, including functions for sequence parsing, demultiplexing, quality filtering and probabilistic taxon assignment with informatic sequence classification trees. See Wilkinson et al (2018) <doi:10.7287/peerj.preprints.26812v1>.
Version: | 1.1.1 |
Imports: | ape (≥ 3.0.0), aphid (≥ 1.1.0), kmer (≥ 1.0.1), openssl, phylogram (≥ 2.0.0), stats, utils, xml2 |
Suggests: | knitr, rmarkdown, testthat |
Published: | 2018-07-20 |
Author: | Shaun Wilkinson [aut, cre] |
Maintainer: | Shaun Wilkinson <shaunpwilkinson at gmail.com> |
BugReports: | http://github.com/shaunpwilkinson/insect/issues |
License: | GPL-3 |
URL: | http://github.com/shaunpwilkinson/insect |
NeedsCompilation: | no |
Citation: | insect citation info |
Materials: | README |
CRAN checks: | insect results |
Reference manual: | insect.pdf |
Vignettes: |
Introduction to the insect package |
Package source: | insect_1.1.1.tar.gz |
Windows binaries: | r-devel: insect_1.1.1.zip, r-release: insect_1.1.1.zip, r-oldrel: insect_1.1.1.zip |
OS X binaries: | r-release: insect_1.1.1.tgz, r-oldrel: insect_1.1.1.tgz |
Old sources: | insect archive |
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