Provides a bioinformatics pipeline for DNA meta-barcoding analysis, including functions for sequence parsing, demultiplexing, quality filtering and probabilistic taxon assignment with informatic sequence classification trees. See Wilkinson et al (2018) <doi:10.7287/peerj.preprints.26812v1>.
| Version: | 1.1.1 |
| Imports: | ape (≥ 3.0.0), aphid (≥ 1.1.0), kmer (≥ 1.0.1), openssl, phylogram (≥ 2.0.0), stats, utils, xml2 |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2018-07-20 |
| Author: | Shaun Wilkinson [aut, cre] |
| Maintainer: | Shaun Wilkinson <shaunpwilkinson at gmail.com> |
| BugReports: | http://github.com/shaunpwilkinson/insect/issues |
| License: | GPL-3 |
| URL: | http://github.com/shaunpwilkinson/insect |
| NeedsCompilation: | no |
| Citation: | insect citation info |
| Materials: | README |
| CRAN checks: | insect results |
| Reference manual: | insect.pdf |
| Vignettes: |
Introduction to the insect package |
| Package source: | insect_1.1.1.tar.gz |
| Windows binaries: | r-devel: insect_1.1.1.zip, r-release: insect_1.1.1.zip, r-oldrel: insect_1.1.1.zip |
| OS X binaries: | r-release: insect_1.1.1.tgz, r-oldrel: insect_1.1.1.tgz |
| Old sources: | insect archive |
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