Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <doi:10.1111/1755-0998.12592>.
| Version: | 4.0.3 |
| Imports: | data.table, ggplot2, magrittr, mmapcharr, plotly, Rcpp (≥ 0.12.8), robust, RSpectra, vcfR |
| LinkingTo: | Rcpp, BH, mmapcharr |
| Suggests: | knitr, rmarkdown, testthat, shiny |
| Published: | 2018-07-03 |
| Author: | Keurcien Luu [aut], Michael Blum [aut, cre], Florian Privé [aut], Eric Bazin [ctb], Nicolas Duforet-Frebourg [ctb] |
| Maintainer: | Michael Blum <michael.blum at univ-grenoble-alpes.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | pcadapt results |
| Reference manual: | pcadapt.pdf |
| Vignettes: |
pcadapt |
| Package source: | pcadapt_4.0.3.tar.gz |
| Windows binaries: | r-devel: pcadapt_4.0.3.zip, r-release: pcadapt_4.0.3.zip, r-oldrel: pcadapt_4.0.3.zip |
| OS X binaries: | r-release: pcadapt_4.0.3.tgz, r-oldrel: pcadapt_4.0.3.tgz |
| Old sources: | pcadapt archive |
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