Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
| Version: | 1.8.9 |
| Depends: | ape, deSolve, GenSA, subplex, nloptr |
| Imports: | parallel, phytools, data.table, methods, diversitree, plotrix |
| Suggests: | testthat, knitr |
| Published: | 2018-11-06 |
| Author: | Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Daniel Caetano [aut] |
| Maintainer: | Jeremy Beaulieu <jbeaulieu at nimbios.org> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Citation: | hisse citation info |
| CRAN checks: | hisse results |
| Reference manual: | hisse.pdf |
| Vignettes: |
Running GeoHiSSE Running MuHiSSE Type I errors, Model rejection, & HiSSE vs. FiSSE Running hisse |
| Package source: | hisse_1.8.9.tar.gz |
| Windows binaries: | r-devel: hisse_1.8.9.zip, r-release: hisse_1.8.9.zip, r-oldrel: hisse_1.8.9.zip |
| OS X binaries: | r-release: hisse_1.8.9.tgz, r-oldrel: hisse_1.8.9.tgz |
| Old sources: | hisse archive |
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