Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>.
| Version: | 0.3.1 |
| Depends: | R (≥ 3.2.5), ggplot2 (≥ 2.0.0) |
| Imports: | alakazam (≥ 0.2.11), dplyr (≥ 0.7.0), doParallel, foreach, graphics, gridExtra, gtools, iterators, lazyeval, parallel, rlang, shazam (≥ 0.1.10), stats, stringi, tidyr |
| Suggests: | knitr, testthat |
| Published: | 2018-10-19 |
| Author: | Daniel Gadala-Maria [aut], Susanna Marquez [aut], Moriah Cohen [aut], Gur Yaari [aut], Jason Vander Heiden [ctb, cre], Steven Kleinstein [aut, cph] |
| Maintainer: | Jason Vander Heiden <jason.vanderheiden at yale.edu> |
| BugReports: | https://bitbucket.org/kleinstein/tigger/issues |
| License: | CC BY-SA 4.0 |
| URL: | http://tigger.readthedocs.io |
| NeedsCompilation: | no |
| Citation: | tigger citation info |
| Materials: | README NEWS |
| CRAN checks: | tigger results |
| Reference manual: | tigger.pdf |
| Vignettes: |
Polymorphism detection and genotyping |
| Package source: | tigger_0.3.1.tar.gz |
| Windows binaries: | r-devel: tigger_0.3.1.zip, r-release: tigger_0.3.1.zip, r-oldrel: tigger_0.3.1.zip |
| OS X binaries: | r-release: tigger_0.3.1.tgz, r-oldrel: tigger_0.3.1.tgz |
| Old sources: | tigger archive |
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