Last updated on 2019-01-15 00:46:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 5.58 | 59.10 | 64.68 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 4.03 | 46.51 | 50.54 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 76.26 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 72.10 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.1 | 7.00 | 74.00 | 81.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1 | 4.36 | 55.08 | 59.44 | OK | |
| r-patched-solaris-x86 | 1.1 | 114.50 | OK | |||
| r-release-linux-x86_64 | 1.1 | 4.76 | 55.13 | 59.89 | OK | |
| r-release-windows-ix86+x86_64 | 1.1 | 10.00 | 71.00 | 81.00 | OK | |
| r-release-osx-x86_64 | 1.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 7.00 | 67.00 | 74.00 | FAIL | |
| r-oldrel-osx-x86_64 | 1.1 | OK |
Version: 1.1
Check: examples
Result: ERROR
Running examples in 'idmTPreg-Ex.R' failed
The error most likely occurred in:
> ### Name: TPreg
> ### Title: Regression Modeling of Transition Probabilities in a Progressive
> ### Illness-Death Model
> ### Aliases: TPreg
>
> ### ** Examples
>
> data(colonTPreg)
>
> co11 <- TPreg( ~ Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, R = 19, t = 200,
+ trans = "11", ncores = 1)
Warning in TPreg(~Age + Nodes + treatment, colonTPreg, link = "logit", s = 50, :
Nodes variable in 'data' has missing value(s),
> co11
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
Transition:
[1] "11"
(s,t):
[1] 50 200
Coefficients:
Estimate St.Err LW.L UP.L P.value
X.Intercept. 2.492609419 0.658436102 1.20207466 3.78314418 0.0001533066
Age -0.005980971 0.009637391 -0.02487026 0.01290832 0.5348624363
Nodes -0.074748098 0.027948299 -0.12952676 -0.01996943 0.0074837796
treatmentLev 0.039682347 0.249693384 -0.44971669 0.52908138 0.8737285137
treatmentLev.5FU 0.929566117 0.334752548 0.27345112 1.58568111 0.0054884214
[1] "18 observations deleted due to missingness from 'data'"
> summary(co11)
Call:
TPreg(formula = ~Age + Nodes + treatment, data = colonTPreg,
link = "logit", s = 50, t = 200, R = 19, trans = "11", ncores = 1)
(s,t):
[1] 50 200
Transition 11 :
Coefficients:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -895.023387 -0.401888881 6.26264521 922.27867219 943.9213673
2 185 2.636107 -0.007185251 -0.07924264 0.10143607 1.0470649
3 200 2.492609 -0.005980971 -0.07474810 0.03968235 0.9295661
Standard Errors:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.033571e+15 0.685527498 10.20998099 1.033571e+15 1.033571e+15
2 185 9.378393e-01 0.014531315 0.02776823 2.233863e-01 3.591341e-01
3 200 6.584361e-01 0.009637391 0.02794830 2.496934e-01 3.347525e-01
Lower limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 -2.025800e+15 -1.74552278 -13.7489175 -2.025800e+15 -2.025800e+15
2 185 7.979418e-01 -0.03566663 -0.1336684 -3.364011e-01 3.431621e-01
3 200 1.202075e+00 -0.02487026 -0.1295268 -4.497167e-01 2.734511e-01
Upper limit:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 2.025800e+15 0.94174502 26.27420795 2.025800e+15 2.025800e+15
2 185 4.474272e+00 0.02129613 -0.02481691 5.392733e-01 1.750968e+00
3 200 3.783144e+00 0.01290832 -0.01996943 5.290814e-01 1.585681e+00
p.value:
time X.Intercept. Age Nodes treatmentLev treatmentLev.5FU
1 56 1.0000000000 0.5577091 0.539622060 1.0000000 1.000000000
2 185 0.0049413891 0.6209766 0.004321113 0.6497687 0.003550892
3 200 0.0001533066 0.5348624 0.007483780 0.8737285 0.005488421
[1] "18 observation(s) deleted due to missingness from 'data'"
>
>
>
> cleanEx()
Error: connections left open:
<-CRANwin.fb05.statistik.uni-dortmund.de:11693 (sockconn)
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.1
Check: examples
Result: FAIL
Flavor: r-oldrel-windows-ix86+x86_64