AmyloGram predicts amyloid proteins using n-gram encoding and random forests. It can be also accessed as a web-based service http://www.smorfland.uni.wroc.pl/shiny/AmyloGram/.
AmyloGram can be used installed from CRAN as the R package:
You can install the latest development version of the code using the
devtools R package.
# Install devtools, if you haven't already. install.packages("devtools") devtools::install_github("michbur/AmyloGram")
After installation GUI can be accessed locally:
Predictions might be also made in the batch mode:
data(AmyloGram_model) data(pep424) predict(AmyloGram_model, pep424[1L:20])