Conducts posterior predictive checks of coalescent models using gene and species trees generated by 'BEAST' or '*BEAST'. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites: 'genealogicalSorting' and 'phybase'. To use these optional packages, the installation of the Python libraries 'NumPy' (>= 1.9.0) and 'DendroPy' (= 3.12.0) is required.
| Version: | 0.7.6 |
| Depends: | R (≥ 3.0.0) |
| Imports: | ape (≥ 3.1-4), ggplot2 (≥ 1.0.0), rPython (≥ 0.0-5), stringr (≥ 0.6.2) |
| Suggests: | genealogicalSorting (≥ 0.92), phybase (≥ 1.3.1), Rmpi (≥ 0.6-5), xtermStyle (≥ 2.2-4) |
| OS_type: | unix |
| Published: | 2015-06-10 |
| Author: | Michael Gruenstaeudl, Noah Reid |
| Maintainer: | Michael Gruenstaeudl <mi.gruenstaeudl at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| SystemRequirements: | gcc (>= 4.9), Python (= 2.7) |
| Citation: | P2C2M citation info |
| CRAN checks: | P2C2M results |
| Reference manual: | P2C2M.pdf |
| Vignettes: |
P2C2M |
| Package source: | P2C2M_0.7.6.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| OS X binaries: | r-release: P2C2M_0.7.6.tgz, r-oldrel: P2C2M_0.7.6.tgz |
| Old sources: | P2C2M archive |
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