Last updated on 2019-01-19 00:46:20 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0-3 | 10.17 | 683.20 | 693.37 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 2.0-3 | 10.00 | 516.24 | 526.24 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 2.0-3 | 798.92 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0-3 | 759.68 | WARN | |||
| r-devel-windows-ix86+x86_64 | 2.0-3 | 25.00 | 859.00 | 884.00 | WARN | |
| r-patched-linux-x86_64 | 2.0-3 | 8.47 | 638.55 | 647.02 | OK | |
| r-patched-solaris-x86 | 2.0-3 | 1363.00 | OK | |||
| r-release-linux-x86_64 | 2.0-3 | 10.80 | 633.79 | 644.59 | OK | |
| r-release-windows-ix86+x86_64 | 2.0-3 | 25.00 | 864.00 | 889.00 | OK | |
| r-release-osx-x86_64 | 2.0-3 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0-7 | 13.00 | 128.00 | 141.00 | OK | |
| r-oldrel-osx-x86_64 | 2.0-3 | ERROR |
Version: 2.0-3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
duplicated vignette title:
‘Cleaning GBIF data for the use in biogeography’
--- re-building ‘Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning in countrycode(dat$countryCode, origin = "iso2c", destination = "iso3c") :
Some values were not matched unambiguously: NONE, ZZ
trying URL ‘http://packages.ropensci.org/src/contrib/rnaturalearthdata_0.2.0.tar.gz’
Content type 'application/gzip' length 3061199 bytes (2.9 MB)
==================================================
downloaded 2.9 MB
* installing *source* package ‘rnaturalearthdata’ ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (rnaturalearthdata)
The downloaded source packages are in
'/tmp/RtmpIxxLKg/downloaded_packages'
Testing for dd.mm to dd.dd conversion errors
Flagged 0 records
--- finished re-building ‘Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd’
--- re-building ‘Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: raster
Loading required package: sp
Attaching package: 'raster'
The following object is masked from 'package:dplyr':
select
Loading required package: maps
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
Using method = 'time', set 'uniq_loc' to FALSE
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
--- finished re-building ‘Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd’
Error: Duplicate vignette titles.
Ensure that the %\VignetteIndexEntry lines in the vignette sources
correspond to the vignette titles.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0-3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
duplicated vignette title:
‘Cleaning GBIF data for the use in biogeography’
--- re-building ‘Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning in countrycode(dat$countryCode, origin = "iso2c", destination = "iso3c") :
Some values were not matched unambiguously: NONE, ZZ
trying URL ‘http://packages.ropensci.org/src/contrib/rnaturalearthdata_0.2.0.tar.gz’
Content type 'application/gzip' length 3061199 bytes (2.9 MB)
==================================================
downloaded 2.9 MB
* installing *source* package ‘rnaturalearthdata’ ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (rnaturalearthdata)
The downloaded source packages are in
'/home/hornik/tmp/scratch/Rtmpi02qFJ/downloaded_packages'
Testing for dd.mm to dd.dd conversion errors
Flagged 0 records
--- finished re-building ‘Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd’
--- re-building ‘Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: raster
Loading required package: sp
Attaching package: 'raster'
The following object is masked from 'package:dplyr':
select
Loading required package: maps
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
Using method = 'time', set 'uniq_loc' to FALSE
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
--- finished re-building ‘Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd’
Error: Duplicate vignette titles.
Ensure that the %\VignetteIndexEntry lines in the vignette sources
correspond to the vignette titles.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0-3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
duplicated vignette title:
‘Cleaning GBIF data for the use in biogeography’
--- re-building ‘Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning in countrycode(dat$countryCode, origin = "iso2c", destination = "iso3c") :
Some values were not matched unambiguously: NONE, ZZ
trying URL 'http://packages.ropensci.org/src/contrib/rnaturalearthdata_0.2.0.tar.gz'
Content type 'application/gzip' length 3061199 bytes (2.9 MB)
==================================================
downloaded 2.9 MB
* installing *source* package ‘rnaturalearthdata’ ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (rnaturalearthdata)
The downloaded source packages are in
'/tmp/RtmpV7xRud/downloaded_packages'
Testing for dd.mm to dd.dd conversion errors
Flagged 0 records
--- finished re-building ‘Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd’
--- re-building ‘Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: raster
Loading required package: sp
Attaching package: 'raster'
The following object is masked from 'package:dplyr':
select
Loading required package: maps
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
Using method = 'time', set 'uniq_loc' to FALSE
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
--- finished re-building ‘Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd’
Error: Duplicate vignette titles.
Ensure that the %\VignetteIndexEntry lines in the vignette sources
correspond to the vignette titles.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0-3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
duplicated vignette title:
‘Cleaning GBIF data for the use in biogeography’
--- re-building ‘Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning in countrycode(dat$countryCode, origin = "iso2c", destination = "iso3c") :
Some values were not matched unambiguously: NONE, ZZ
trying URL 'http://packages.ropensci.org/src/contrib/rnaturalearthdata_0.2.0.tar.gz'
Content type 'application/gzip' length 3061199 bytes (2.9 MB)
==================================================
downloaded 2.9 MB
* installing *source* package ‘rnaturalearthdata’ ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (rnaturalearthdata)
The downloaded source packages are in
'/tmp/RtmpK1z78A/downloaded_packages'
Testing for dd.mm to dd.dd conversion errors
Flagged 0 records
--- finished re-building ‘Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd’
--- re-building ‘Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: raster
Loading required package: sp
Attaching package: 'raster'
The following object is masked from 'package:dplyr':
select
Loading required package: maps
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
Using method = 'time', set 'uniq_loc' to FALSE
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
--- finished re-building ‘Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd’
Error: Duplicate vignette titles.
Ensure that the %\VignetteIndexEntry lines in the vignette sources
correspond to the vignette titles.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0-3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
duplicated vignette title:
'Cleaning GBIF data for the use in biogeography'
--- re-building 'Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Warning in countrycode(dat$countryCode, origin = "iso2c", destination = "iso3c") :
Some values were not matched unambiguously: NONE, ZZ
trying URL 'http://packages.ropensci.org/src/contrib/rnaturalearthdata_0.2.0.tar.gz'
Content type 'application/gzip' length 3061199 bytes (2.9 MB)
==================================================
downloaded 2.9 MB
* installing *source* package 'rnaturalearthdata' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* DONE (rnaturalearthdata)
The downloaded source packages are in
'D:\temp\Rtmpsxrb5z\downloaded_packages'
Testing for dd.mm to dd.dd conversion errors
Flagged 0 records
--- finished re-building 'Tutorial_Cleaning_GBIF_data_with_CoordinateCleaner.Rmd'
--- re-building 'Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: raster
Loading required package: sp
Attaching package: 'raster'
The following object is masked from 'package:dplyr':
select
Loading required package: maps
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age") :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallatitude not found. Using lat instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
decimallongitude not found. Using lng instead.
Warning in cf_range(cl, taxon = "taxon_name", min_age = "late_age", max_age = "early_age", :
Using method = 'time', set 'uniq_loc' to FALSE
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallatitude not found. Using lat instead.
Warning in cf_outl(cl, taxon = "taxon_name", lat = "lat", lon = "lng", min_age = "late_age", :
decimallongitude not found. Using lng instead.
--- finished re-building 'Tutorial_Cleaning_PBDB_fossils_with_CoordinateCleaner.Rmd'
Error: Duplicate vignette titles.
Ensure that the %\VignetteIndexEntry lines in the vignette sources
correspond to the vignette titles.
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 2.0-3
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-oldrel-osx-x86_64